miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 140551 0.67 0.722724
Target:  5'- uGGACUucgcccUCCCCGcgGugaucGGGGGCCUCu-- -3'
miRNA:   3'- -CCUGA------AGGGGCuaC-----CCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 50970 0.67 0.722724
Target:  5'- gGGugUaCCCCGGcgUGGuGuuuccGGGCCCCAg- -3'
miRNA:   3'- -CCugAaGGGGCU--ACC-C-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 94554 0.67 0.741974
Target:  5'- cGGCggCCCUGGUGGcGGGGCUCgGg- -3'
miRNA:   3'- cCUGaaGGGGCUACC-CUCCGGGgUau -5'
21373 3' -59 NC_004812.1 + 46475 0.67 0.751464
Target:  5'- uGGACggCCUCa--GGGAGGgCCCCGa- -3'
miRNA:   3'- -CCUGaaGGGGcuaCCCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 80426 0.67 0.712982
Target:  5'- gGGACccgUCCCCGAgcGGccGGGCCCUg-- -3'
miRNA:   3'- -CCUGa--AGGGGCUacCC--UCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 24489 0.67 0.732391
Target:  5'- cGGCcgcUCCUgGAcGGGGGGCCCCc-- -3'
miRNA:   3'- cCUGa--AGGGgCUaCCCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 83 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 156493 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 79743 0.67 0.751464
Target:  5'- cGGACaUCCCCGggGGGuGGacgugccugCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCuaCCCuCCg--------GGGUau -5'
21373 3' -59 NC_004812.1 + 75160 0.67 0.751464
Target:  5'- gGGAggcCCCCGAucgccUGGGgcccuGGGCCCCGg- -3'
miRNA:   3'- -CCUgaaGGGGCU-----ACCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 30775 0.66 0.805986
Target:  5'- cGGGCgagccggCCCCGccugcgGGGccgcgggccgaGGGCCCCAc- -3'
miRNA:   3'- -CCUGaa-----GGGGCua----CCC-----------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 21244 0.66 0.805986
Target:  5'- gGGACcUCCCCGu-----GGCCCCAg- -3'
miRNA:   3'- -CCUGaAGGGGCuacccuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 19759 0.66 0.805986
Target:  5'- ------gCCCGGUGcGGGGGUCCCAg- -3'
miRNA:   3'- ccugaagGGGCUAC-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 8410 0.66 0.760854
Target:  5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3'
miRNA:   3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5'
21373 3' -59 NC_004812.1 + 137238 0.66 0.770134
Target:  5'- uGGACgUCCgCgCGGUGGGcGGGCUCaCGUGc -3'
miRNA:   3'- -CCUGaAGG-G-GCUACCC-UCCGGG-GUAU- -5'
21373 3' -59 NC_004812.1 + 1232 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 137948 0.66 0.770134
Target:  5'- cGGcCUUUCCCGgcGcGGcGGCCCCu-- -3'
miRNA:   3'- -CCuGAAGGGGCuaC-CCuCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 49795 0.66 0.805117
Target:  5'- cGGGCccUCCCGcgGGGcccagucggcgcgAGGCCCCc-- -3'
miRNA:   3'- -CCUGaaGGGGCuaCCC-------------UCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 32133 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.