miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 44716 0.69 0.613305
Target:  5'- -cGCUUUCCCGgcGGG-GGUCCCGg- -3'
miRNA:   3'- ccUGAAGGGGCuaCCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 2895 0.69 0.600286
Target:  5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3'
miRNA:   3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5'
21373 3' -59 NC_004812.1 + 71911 0.69 0.593291
Target:  5'- cGACgcgucCCCCGGUGcGGGccuGGCCCCGa- -3'
miRNA:   3'- cCUGaa---GGGGCUAC-CCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 33796 0.69 0.600286
Target:  5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3'
miRNA:   3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5'
21373 3' -59 NC_004812.1 + 154790 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 28975 0.69 0.619323
Target:  5'- gGGGCcUCCCCGGacugggacugggacUGGGAGcgcggcccgggccGCCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCU--------------ACCCUC-------------CGGGGUau -5'
21373 3' -59 NC_004812.1 + 130837 0.68 0.643411
Target:  5'- gGGGCUgacgacggCCUCGAcgcucaagUGGG-GGCCCCGg- -3'
miRNA:   3'- -CCUGAa-------GGGGCU--------ACCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 3521 0.68 0.683394
Target:  5'- cGGCggCCCCGggGGcGGGGCCgCGg- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCGGgGUau -5'
21373 3' -59 NC_004812.1 + 30076 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 126296 0.68 0.683394
Target:  5'- gGGGCcgUUCCUGGUGcccgcGGAGGuCCCCAg- -3'
miRNA:   3'- -CCUGa-AGGGGCUAC-----CCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 106815 0.7 0.543841
Target:  5'- cGACUgggCCCCGc-GGGAGGgCCCGc- -3'
miRNA:   3'- cCUGAa--GGGGCuaCCCUCCgGGGUau -5'
21373 3' -59 NC_004812.1 + 155088 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 32133 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 148432 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 37208 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 14221 0.74 0.334858
Target:  5'- cGGGCgcccuuuaUCCCCGGUGcGAGGUCCCAc- -3'
miRNA:   3'- -CCUGa-------AGGGGCUACcCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 105035 0.74 0.357597
Target:  5'- cGGCcUCCgCGAUGGGAGGCgCCGc- -3'
miRNA:   3'- cCUGaAGGgGCUACCCUCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 151051 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 151168 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 62032 0.71 0.505273
Target:  5'- aGGCggCCUCGGgcgGaGGAGGCCCCGa- -3'
miRNA:   3'- cCUGaaGGGGCUa--C-CCUCCGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.