miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 120267 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 120150 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 22677 0.72 0.471601
Target:  5'- aGGuccuCUUCCgCGAUGGGcaggccggcgaguagAGGCCCCGc- -3'
miRNA:   3'- -CCu---GAAGGgGCUACCC---------------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 101896 0.66 0.758985
Target:  5'- cGGGCUagggcgCCCCGAggcgcggcggucGGGccucgGGGCCCCGg- -3'
miRNA:   3'- -CCUGAa-----GGGGCUa-----------CCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 6307 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 44716 0.69 0.613305
Target:  5'- -cGCUUUCCCGgcGGG-GGUCCCGg- -3'
miRNA:   3'- ccUGAAGGGGCuaCCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 60465 0.69 0.613305
Target:  5'- cGACggCCCCGAaGaGGAGGCCggCCAg- -3'
miRNA:   3'- cCUGaaGGGGCUaC-CCUCCGG--GGUau -5'
21373 3' -59 NC_004812.1 + 64715 0.67 0.712982
Target:  5'- cGACUUCCCCGAggccgcGGGcaugcGcGCCCCcgGg -3'
miRNA:   3'- cCUGAAGGGGCUa-----CCCu----C-CGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 76197 0.67 0.707105
Target:  5'- gGGACgggUCCCCGgcGGaGcccucggcgugcagcAGGCCCCcgAa -3'
miRNA:   3'- -CCUGa--AGGGGCuaCC-C---------------UCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 155585 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 1232 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 19759 0.66 0.805986
Target:  5'- ------gCCCGGUGcGGGGGUCCCAg- -3'
miRNA:   3'- ccugaagGGGCUAC-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 21244 0.66 0.805986
Target:  5'- gGGACcUCCCCGu-----GGCCCCAg- -3'
miRNA:   3'- -CCUGaAGGGGCuacccuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 30775 0.66 0.805986
Target:  5'- cGGGCgagccggCCCCGccugcgGGGccgcgggccgaGGGCCCCAc- -3'
miRNA:   3'- -CCUGaa-----GGGGCua----CCC-----------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 127639 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 50970 0.67 0.722724
Target:  5'- gGGugUaCCCCGGcgUGGuGuuuccGGGCCCCAg- -3'
miRNA:   3'- -CCugAaGGGGCU--ACC-C-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 24489 0.67 0.732391
Target:  5'- cGGCcgcUCCUgGAcGGGGGGCCCCc-- -3'
miRNA:   3'- cCUGa--AGGGgCUaCCCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 94554 0.67 0.741974
Target:  5'- cGGCggCCCUGGUGGcGGGGCUCgGg- -3'
miRNA:   3'- cCUGaaGGGGCUACC-CUCCGGGgUau -5'
21373 3' -59 NC_004812.1 + 123889 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.