miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 123839 0.66 0.788331
Target:  5'- cGGGCg--CCCGGgccaauGGAGGCCCCcgGc -3'
miRNA:   3'- -CCUGaagGGGCUac----CCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 28317 0.66 0.788331
Target:  5'- ----aUUCCCGGUGGGccgccuuGGCCgCCAUAa -3'
miRNA:   3'- ccugaAGGGGCUACCCu------CCGG-GGUAU- -5'
21373 3' -59 NC_004812.1 + 4492 0.66 0.779296
Target:  5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3'
miRNA:   3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5'
21373 3' -59 NC_004812.1 + 38379 0.66 0.778385
Target:  5'- cGGGCggcggggCCCGccGGGAgcucggcgacguaGGCCCCGUAg -3'
miRNA:   3'- -CCUGaag----GGGCuaCCCU-------------CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 137948 0.66 0.770134
Target:  5'- cGGcCUUUCCCGgcGcGGcGGCCCCu-- -3'
miRNA:   3'- -CCuGAAGGGGCuaC-CCuCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 137238 0.66 0.770134
Target:  5'- uGGACgUCCgCgCGGUGGGcGGGCUCaCGUGc -3'
miRNA:   3'- -CCUGaAGG-G-GCUACCC-UCCGGG-GUAU- -5'
21373 3' -59 NC_004812.1 + 101896 0.66 0.758985
Target:  5'- cGGGCUagggcgCCCCGAggcgcggcggucGGGccucgGGGCCCCGg- -3'
miRNA:   3'- -CCUGAa-----GGGGCUa-----------CCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 46475 0.67 0.751464
Target:  5'- uGGACggCCUCa--GGGAGGgCCCCGa- -3'
miRNA:   3'- -CCUGaaGGGGcuaCCCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 94554 0.67 0.741974
Target:  5'- cGGCggCCCUGGUGGcGGGGCUCgGg- -3'
miRNA:   3'- cCUGaaGGGGCUACC-CUCCGGGgUau -5'
21373 3' -59 NC_004812.1 + 24489 0.67 0.732391
Target:  5'- cGGCcgcUCCUgGAcGGGGGGCCCCc-- -3'
miRNA:   3'- cCUGa--AGGGgCUaCCCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 50970 0.67 0.722724
Target:  5'- gGGugUaCCCCGGcgUGGuGuuuccGGGCCCCAg- -3'
miRNA:   3'- -CCugAaGGGGCU--ACC-C-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 140551 0.67 0.722724
Target:  5'- uGGACUucgcccUCCCCGcgGugaucGGGGGCCUCu-- -3'
miRNA:   3'- -CCUGA------AGGGGCuaC-----CCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 64715 0.67 0.712982
Target:  5'- cGACUUCCCCGAggccgcGGGcaugcGcGCCCCcgGg -3'
miRNA:   3'- cCUGAAGGGGCUa-----CCCu----C-CGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 123980 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.