miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 104673 0.66 0.61432
Target:  5'- uGCG-GGGGUgggacagGUCCCacagcugggccgCCGCCauGCGGGCg -3'
miRNA:   3'- uCGUaUCCCG-------UAGGG------------GGCGG--CGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 101725 0.66 0.61432
Target:  5'- uGGCcggGGGGCgggcccugggGUCCCCCGugcCCGCcacccccGGGUa -3'
miRNA:   3'- -UCGua-UCCCG----------UAGGGGGC---GGCG-------CCCG- -5'
21373 5' -63.1 NC_004812.1 + 82996 0.66 0.612366
Target:  5'- aGGCGcgGGGGCgccacgaucccgcgGUCCCUgGUCGUGaGGUa -3'
miRNA:   3'- -UCGUa-UCCCG--------------UAGGGGgCGGCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 102023 0.66 0.609437
Target:  5'- cGCG-AGGGUggcucguccgccuccGUCUCCCGCgGCGccccGGCg -3'
miRNA:   3'- uCGUaUCCCG---------------UAGGGGGCGgCGC----CCG- -5'
21373 5' -63.1 NC_004812.1 + 102756 0.66 0.605534
Target:  5'- cGCGUAGgcGGCGgcgucgucgagCCCCC-CCGCGuGGUc -3'
miRNA:   3'- uCGUAUC--CCGUa----------GGGGGcGGCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 50098 0.66 0.605534
Target:  5'- cGGCcgccGGCG-CCCCgCGCCGCGGacccGCg -3'
miRNA:   3'- -UCGuaucCCGUaGGGG-GCGGCGCC----CG- -5'
21373 5' -63.1 NC_004812.1 + 15903 0.66 0.605534
Target:  5'- aGGCGggGGGGCAccucaucgacUCggccgcggucgaCCCCGCCcugcCGGGCu -3'
miRNA:   3'- -UCGUa-UCCCGU----------AG------------GGGGCGGc---GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 41547 0.66 0.605534
Target:  5'- cGCAgcGaGC-UCCgCCGgCGCGGGCu -3'
miRNA:   3'- uCGUauCcCGuAGGgGGCgGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 30825 0.66 0.605534
Target:  5'- gGGC--AGGGCGgcgCCaggcgCCGcCCGgGGGCg -3'
miRNA:   3'- -UCGuaUCCCGUa--GGg----GGC-GGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 46914 0.66 0.605534
Target:  5'- cAGCGcGGcGGCGgugguggucuUCCCCagGCCGUGuGGCc -3'
miRNA:   3'- -UCGUaUC-CCGU----------AGGGGg-CGGCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 14533 0.66 0.605534
Target:  5'- cGGCAgcuGGGCcgCgaCCGCggggGCGGGCu -3'
miRNA:   3'- -UCGUau-CCCGuaGggGGCGg---CGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 126563 0.66 0.605534
Target:  5'- cGCcgAGGcgugccccuGCGUCgCCCCGUgcaUGUGGGCc -3'
miRNA:   3'- uCGuaUCC---------CGUAG-GGGGCG---GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 89896 0.66 0.602609
Target:  5'- ----gAGGGCAucuucuucgccgcgUCCUUCGCCGCGaucGGCu -3'
miRNA:   3'- ucguaUCCCGU--------------AGGGGGCGGCGC---CCG- -5'
21373 5' -63.1 NC_004812.1 + 65076 0.66 0.599685
Target:  5'- cGGCGgacgcGGGCucgcguccgcaggCCCCgGCCGCcGGCu -3'
miRNA:   3'- -UCGUau---CCCGua-----------GGGGgCGGCGcCCG- -5'
21373 5' -63.1 NC_004812.1 + 104800 0.66 0.599685
Target:  5'- gGGCuggugGGGGCGgugcugaagugcagcUUCUUCGCCGCGGcgGCg -3'
miRNA:   3'- -UCGua---UCCCGU---------------AGGGGGCGGCGCC--CG- -5'
21373 5' -63.1 NC_004812.1 + 38600 0.66 0.59579
Target:  5'- cGGCGcGGGGaccagGUCCCCCG-CGUGGuucGCg -3'
miRNA:   3'- -UCGUaUCCCg----UAGGGGGCgGCGCC---CG- -5'
21373 5' -63.1 NC_004812.1 + 155742 0.66 0.59579
Target:  5'- cGCGcgcGGGCGgggCUCgCgGCCGCGGGg -3'
miRNA:   3'- uCGUau-CCCGUa--GGG-GgCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 126521 0.66 0.59579
Target:  5'- cGGCc-GGGGCcgcgCCCCCGCga-GGGCc -3'
miRNA:   3'- -UCGuaUCCCGua--GGGGGCGgcgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 123254 0.66 0.59579
Target:  5'- ----gAGGGCGUCCUCgGCCGgcgccuauCGGGg -3'
miRNA:   3'- ucguaUCCCGUAGGGGgCGGC--------GCCCg -5'
21373 5' -63.1 NC_004812.1 + 129796 0.66 0.59579
Target:  5'- cAGCAgGGGcGCGUaCgCgCGCCGCaGGCu -3'
miRNA:   3'- -UCGUaUCC-CGUA-GgGgGCGGCGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.