miRNA display CGI

Results 61 - 80 of 796 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21374	3'	-56.4	NC_004812.1	+	131503	0.66	0.881419
	Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3' miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	119795	0.66	0.894968
	Target:  5'- uGCCCCGGGGuCUGCCugcCGCcCGGCGg -3' miRNA:   3'- gCGGGGCUCU-GGUGGu--GUGuGUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	11753	0.66	0.888306
	Target:  5'- gGCCgUGGGGCU-CCGCACGCucuccccGCGCg -3' miRNA:   3'- gCGGgGCUCUGGuGGUGUGUGu------UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	117989	0.66	0.894968
	Target:  5'- uCGCCCggcgcgGAGACCcccGCCGCGgACucgGCGCg -3' miRNA:   3'- -GCGGGg-----CUCUGG---UGGUGUgUGu--UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	86297	0.66	0.894968
	Target:  5'- uGCCCCGGcauGGCCGaguuCCGCGaucucgACAACGCc -3' miRNA:   3'- gCGGGGCU---CUGGU----GGUGUg-----UGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	106025	0.66	0.881419
	Target:  5'- gCGaUCCUGAucGCCGCCAacgGCGCGACGCa -3' miRNA:   3'- -GC-GGGGCUc-UGGUGGUg--UGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	85397	0.66	0.888306
	Target:  5'- gCGCCCgGGGGCCgcguuccucuACCugGCGuucaccuaccguCAGCGCc -3' miRNA:   3'- -GCGGGgCUCUGG----------UGGugUGU------------GUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	49788	0.66	0.888306
	Target:  5'- gGCCCCGcGGGCCcucccgcgggGCC-CAguCGGCGCg -3' miRNA:   3'- gCGGGGC-UCUGG----------UGGuGUguGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	67343	0.66	0.894968
	Target:  5'- cCGCgCCGcGGCCugcgcgucCCACGCcuGCGACACc -3' miRNA:   3'- -GCGgGGCuCUGGu-------GGUGUG--UGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	75477	0.66	0.881419
	Target:  5'- uGCUCCGcGGCCGCgGCcagguccaGCGGCACg -3' miRNA:   3'- gCGGGGCuCUGGUGgUGug------UGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	733	0.66	0.880015
	Target:  5'- cCGCCCCuccccucccCCGCCGCGCGCGccuCGCc -3' miRNA:   3'- -GCGGGGcucu-----GGUGGUGUGUGUu--GUG- -5'
21374	3'	-56.4	NC_004812.1	+	17309	0.66	0.894968
	Target:  5'- cCGCCCUc-GGCCGCCGCAC-Cu-CGCc -3' miRNA:   3'- -GCGGGGcuCUGGUGGUGUGuGuuGUG- -5'
21374	3'	-56.4	NC_004812.1	+	91777	0.66	0.888306
	Target:  5'- -aCCCgGAGGaggCugCACAgGCAGCGCa -3' miRNA:   3'- gcGGGgCUCUg--GugGUGUgUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	83089	0.66	0.880718
	Target:  5'- cCGCCCCc-GGCCACCggccuccuguucgGCACGCGccuggcggacugGCGCc -3' miRNA:   3'- -GCGGGGcuCUGGUGG-------------UGUGUGU------------UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	89832	0.66	0.881419
	Target:  5'- uGCCCCGAc-CCACgGCGCuCGcCACa -3' miRNA:   3'- gCGGGGCUcuGGUGgUGUGuGUuGUG- -5'
21374	3'	-56.4	NC_004812.1	+	152851	0.66	0.901404
	Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3' miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	5994	0.66	0.881419
	Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3' miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	114829	0.66	0.881419
	Target:  5'- gGCcgCCCGAG-CgGCCGagGCGCGGCGCg -3' miRNA:   3'- gCG--GGGCUCuGgUGGUg-UGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	35062	0.66	0.90761
	Target:  5'- uGCCgCGc-GCCACCAgcCGCGCGACGa -3' miRNA:   3'- gCGGgGCucUGGUGGU--GUGUGUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	34529	0.66	0.881419
	Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3' miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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