miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 781 0.66 0.901404
Target:  5'- gGCCCCGcgggagauGGGCCGCCGCcccCGCcGC-Cg -3'
miRNA:   3'- gCGGGGC--------UCUGGUGGUGu--GUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 89859 0.66 0.900771
Target:  5'- uCGUgCgCGAGGCCGgCGCGCugcuccgACGGCACu -3'
miRNA:   3'- -GCGgG-GCUCUGGUgGUGUG-------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 112318 0.66 0.901405
Target:  5'- gCGCCUCGGGcggcugGCCGCggaggcgguCGCGCGCGACcaGCg -3'
miRNA:   3'- -GCGGGGCUC------UGGUG---------GUGUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 71990 0.66 0.894968
Target:  5'- gCGCCCCGGGGCUggGgCGCGguCGucuCGCg -3'
miRNA:   3'- -GCGGGGCUCUGG--UgGUGUguGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 67343 0.66 0.894968
Target:  5'- cCGCgCCGcGGCCugcgcgucCCACGCcuGCGACACc -3'
miRNA:   3'- -GCGgGGCuCUGGu-------GGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 152851 0.66 0.901404
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 43620 0.66 0.888306
Target:  5'- uGCCUCGGcGGCCGCgGCGcCGCGAUcCa -3'
miRNA:   3'- gCGGGGCU-CUGGUGgUGU-GUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 96546 0.66 0.901404
Target:  5'- gCGCUCCGcccuGCCGCUGuCGCGCgAGCACa -3'
miRNA:   3'- -GCGGGGCuc--UGGUGGU-GUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 117989 0.66 0.894968
Target:  5'- uCGCCCggcgcgGAGACCcccGCCGCGgACucgGCGCg -3'
miRNA:   3'- -GCGGGg-----CUCUGG---UGGUGUgUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 93243 0.66 0.881419
Target:  5'- gCGCCUCGAGAuCCGCgACA---AACGCc -3'
miRNA:   3'- -GCGGGGCUCU-GGUGgUGUgugUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 103715 0.66 0.881419
Target:  5'- aCGCCCuCGAGcCCugCACcgucgguCACcGGCGCu -3'
miRNA:   3'- -GCGGG-GCUCuGGugGUGu------GUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 101343 0.66 0.905773
Target:  5'- uCGCCgcagaggcgggcguUCGcGGCCACC-CGCACGACGg -3'
miRNA:   3'- -GCGG--------------GGCuCUGGUGGuGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 137230 0.66 0.901404
Target:  5'- gGCCCUGcuGGACguCCGCGCGguGgGCg -3'
miRNA:   3'- gCGGGGC--UCUGguGGUGUGUguUgUG- -5'
21374 3' -56.4 NC_004812.1 + 89948 0.66 0.888306
Target:  5'- gGCCCgCGAG-CgGCgGCGCGCcucccGACGCg -3'
miRNA:   3'- gCGGG-GCUCuGgUGgUGUGUG-----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 141487 0.66 0.888306
Target:  5'- uCGCCgUCGGGggcGCCGCCGUAC-CGGCGCa -3'
miRNA:   3'- -GCGG-GGCUC---UGGUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 15146 0.66 0.881419
Target:  5'- uCGCCUCGGGGgCuCCcCGCACGACc- -3'
miRNA:   3'- -GCGGGGCUCUgGuGGuGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 131828 0.66 0.881419
Target:  5'- uCGCCCUGAucAUCACCccgguGCGCAuCGACGCc -3'
miRNA:   3'- -GCGGGGCUc-UGGUGG-----UGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 112811 0.66 0.894968
Target:  5'- uGUCggUCGAGGCCAUgGCGCAgaaGACGCa -3'
miRNA:   3'- gCGG--GGCUCUGGUGgUGUGUg--UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1791 0.66 0.894968
Target:  5'- cCGCUCCGcc-CCGCCGCA-GCAugGCg -3'
miRNA:   3'- -GCGGGGCucuGGUGGUGUgUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 47974 0.66 0.888306
Target:  5'- aCGCCcgCCGGuaggcGGCCAgCACGCGCGccucgugguGCACg -3'
miRNA:   3'- -GCGG--GGCU-----CUGGUgGUGUGUGU---------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.