miRNA display CGI


Results 121 - 140 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 43620 0.66 0.888306
Target:  5'- uGCCUCGGcGGCCGCgGCGcCGCGAUcCa -3'
miRNA:   3'- gCGGGGCU-CUGGUGgUGU-GUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 129515 0.66 0.894968
Target:  5'- cCGCCCaaGGGCC-CCgggACGCugGACAUg -3'
miRNA:   3'- -GCGGGgcUCUGGuGG---UGUGugUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 53434 0.66 0.894968
Target:  5'- aG-CCCGGGGCCG-CGCugACGGCGg -3'
miRNA:   3'- gCgGGGCUCUGGUgGUGugUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 5256 0.66 0.894968
Target:  5'- gCGCgCCGAGucgGCCGCCGCgGCcCcGCGCu -3'
miRNA:   3'- -GCGgGGCUC---UGGUGGUG-UGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 138134 0.66 0.894968
Target:  5'- cCGCCCCucguccugGAGGgCACgUACACGC-ACGCc -3'
miRNA:   3'- -GCGGGG--------CUCUgGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 32692 0.66 0.894968
Target:  5'- cCGCUCCGcc-CCGCCGCA-GCAugGCg -3'
miRNA:   3'- -GCGGGGCucuGGUGGUGUgUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 31664 0.66 0.90761
Target:  5'- gGgCCgGGGACaGCCGCugGgGGCGCa -3'
miRNA:   3'- gCgGGgCUCUGgUGGUGugUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27443 0.66 0.888306
Target:  5'- aGCCCaguagcacgaUGAGGCCGCgCACGuuCAGCGCc -3'
miRNA:   3'- gCGGG----------GCUCUGGUG-GUGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 48550 0.66 0.881419
Target:  5'- cCGCCgCCGAcuucccccUCACCGCcCGCAGCGCc -3'
miRNA:   3'- -GCGG-GGCUcu------GGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 29997 0.66 0.881419
Target:  5'- uCGCCCuCGAuGGCCAggaCGCGCugGGC-Ca -3'
miRNA:   3'- -GCGGG-GCU-CUGGUg--GUGUGugUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 127112 0.66 0.894968
Target:  5'- cCGCCuCCGGGcGCC-CCGCGCGagggaccguGCGCg -3'
miRNA:   3'- -GCGG-GGCUC-UGGuGGUGUGUgu-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 86297 0.66 0.894968
Target:  5'- uGCCCCGGcauGGCCGaguuCCGCGaucucgACAACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGU----GGUGUg-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154443 0.66 0.894968
Target:  5'- cCGCCgCCGuggagguGGCCGCCGC-CGCGAgcccCGCc -3'
miRNA:   3'- -GCGG-GGCu------CUGGUGGUGuGUGUU----GUG- -5'
21374 3' -56.4 NC_004812.1 + 87572 0.66 0.901404
Target:  5'- uGCCCuCGAcGcCCGCCAUGCugGGCc- -3'
miRNA:   3'- gCGGG-GCU-CuGGUGGUGUGugUUGug -5'
21374 3' -56.4 NC_004812.1 + 106025 0.66 0.881419
Target:  5'- gCGaUCCUGAucGCCGCCAacgGCGCGACGCa -3'
miRNA:   3'- -GC-GGGGCUc-UGGUGGUg--UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 105783 0.67 0.851732
Target:  5'- cCGCCCguaGAcGugCGCCAC-CACAgauACACc -3'
miRNA:   3'- -GCGGGg--CU-CugGUGGUGuGUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 70973 0.67 0.859465
Target:  5'- gCGCCCCGAGGCguggggccggaaCGCCucCAgACGGCcCg -3'
miRNA:   3'- -GCGGGGCUCUG------------GUGGu-GUgUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 15526 0.67 0.859465
Target:  5'- gCGCgUgCGuGACCccGCCgGCGCGCAGCGCg -3'
miRNA:   3'- -GCG-GgGCuCUGG--UGG-UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 118659 0.67 0.859465
Target:  5'- gGCCCUGGcGCgGuCCACAguCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUcUGgU-GGUGU--GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 106576 0.67 0.874314
Target:  5'- gGCgCCCGGGcCgGgCGCAgACGGCGCg -3'
miRNA:   3'- gCG-GGGCUCuGgUgGUGUgUGUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.