miRNA display CGI


Results 141 - 160 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 80439 0.67 0.851732
Target:  5'- cCGCCCaccccaGCCGCCcgcaagaggGCGCGCGACGCc -3'
miRNA:   3'- -GCGGGgcuc--UGGUGG---------UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 139307 0.67 0.851732
Target:  5'- cCGCCaaCGGGACgGCCGgCGCggagaGCGACGCg -3'
miRNA:   3'- -GCGGg-GCUCUGgUGGU-GUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5416 0.67 0.835684
Target:  5'- gGCCCCGcGGACgACgGCGgggACAGCGCc -3'
miRNA:   3'- gCGGGGC-UCUGgUGgUGUg--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 57837 0.67 0.851732
Target:  5'- cCGCCUCGGcGGCCcacucGCCGC-CGCcGCGCu -3'
miRNA:   3'- -GCGGGGCU-CUGG-----UGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 43470 0.67 0.851732
Target:  5'- cCGCCCCcacGAG-CC-CCAgGuCGCGGCGCg -3'
miRNA:   3'- -GCGGGG---CUCuGGuGGUgU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 105783 0.67 0.851732
Target:  5'- cCGCCCguaGAcGugCGCCAC-CACAgauACACc -3'
miRNA:   3'- -GCGGGg--CU-CugGUGGUGuGUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 106787 0.67 0.866993
Target:  5'- gCGUCCUGGuGACCcCCACGCGCuGGCu- -3'
miRNA:   3'- -GCGGGGCU-CUGGuGGUGUGUG-UUGug -5'
21374 3' -56.4 NC_004812.1 + 25488 0.67 0.835684
Target:  5'- gGCCCCGGuuCUACUACgACGCGGCcucGCa -3'
miRNA:   3'- gCGGGGCUcuGGUGGUG-UGUGUUG---UG- -5'
21374 3' -56.4 NC_004812.1 + 116763 0.67 0.835684
Target:  5'- aGCCCCGGccccccGcACCGCCuacggGCACGCGGC-Cg -3'
miRNA:   3'- gCGGGGCU------C-UGGUGG-----UGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 151082 0.67 0.835684
Target:  5'- gGCCCCcGGcCCGCCGugucccugcUGCGCGGCGCc -3'
miRNA:   3'- gCGGGGcUCuGGUGGU---------GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 48035 0.67 0.835684
Target:  5'- gCGCugCCCGAGcggggcgcgcGCCACCAgcgaGCGCAGCGa -3'
miRNA:   3'- -GCG--GGGCUC----------UGGUGGUg---UGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 48866 0.67 0.835684
Target:  5'- gCGCCUCGucaAGGCCcggGCCcugGCGCGCAccuACACg -3'
miRNA:   3'- -GCGGGGC---UCUGG---UGG---UGUGUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 149585 0.67 0.869947
Target:  5'- gCGuCCCCGGGGgaaaugugcgccgacCCGCCGCGgcgauguucgUGCGACGCg -3'
miRNA:   3'- -GC-GGGGCUCU---------------GGUGGUGU----------GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18652 0.67 0.866993
Target:  5'- cCGUCuCCGcAGACgGCCAUgucCACGGCGCc -3'
miRNA:   3'- -GCGG-GGC-UCUGgUGGUGu--GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 85784 0.67 0.866993
Target:  5'- -cCCCCGGuGCaugCGCCACACGgAGCGCu -3'
miRNA:   3'- gcGGGGCUcUG---GUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 128934 0.67 0.866993
Target:  5'- gGCCCCGGcGGCaCGCgGCGC-CAGC-Cg -3'
miRNA:   3'- gCGGGGCU-CUG-GUGgUGUGuGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 49262 0.67 0.835684
Target:  5'- cCGCCCCcaacGGCCGaauCgACACACAAgGCg -3'
miRNA:   3'- -GCGGGGcu--CUGGU---GgUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 113585 0.67 0.866993
Target:  5'- gGCCCCaGGACC-CCAUcguCGCGACu- -3'
miRNA:   3'- gCGGGGcUCUGGuGGUGu--GUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 136837 0.67 0.833212
Target:  5'- uCGCCCCGgcgcgcgucgccugGGACCcCCGCACcggGCugguGGCGCg -3'
miRNA:   3'- -GCGGGGC--------------UCUGGuGGUGUG---UG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 58093 0.67 0.835684
Target:  5'- uCGUCgCCGGGGCCGCCcgGgACcCGGCGCc -3'
miRNA:   3'- -GCGG-GGCUCUGGUGG--UgUGuGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.