Results 61 - 80 of 796 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21374 | 3' | -56.4 | NC_004812.1 | + | 135392 | 0.76 | 0.380247 |
Target: 5'- uCGCCgCGAGACUucuGCCGCuuucuGCGCGGCGCg -3' miRNA: 3'- -GCGGgGCUCUGG---UGGUG-----UGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 34801 | 0.76 | 0.364075 |
Target: 5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3' miRNA: 3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 121864 | 0.76 | 0.372101 |
Target: 5'- gGCCCCGGGGCCGCCccaGgACGGCGa -3' miRNA: 3'- gCGGGGCUCUGGUGGug-UgUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 81657 | 0.76 | 0.372101 |
Target: 5'- gCGCaCCCGcuGACCGCgGCGCGCGACGg -3' miRNA: 3'- -GCG-GGGCu-CUGGUGgUGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 61114 | 0.76 | 0.38768 |
Target: 5'- gCGCCCCGcGGCgCGCCggcgcccGCGCACAACAa -3' miRNA: 3'- -GCGGGGCuCUG-GUGG-------UGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 144457 | 0.75 | 0.422724 |
Target: 5'- gGCCCCGAcGGCgCGCCGC-CcCAGCGCg -3' miRNA: 3'- gCGGGGCU-CUG-GUGGUGuGuGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 153526 | 0.75 | 0.421846 |
Target: 5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3' miRNA: 3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 127732 | 0.75 | 0.449537 |
Target: 5'- gCGgCCCGcGGCCAgCgCACGCGCGGCGCg -3' miRNA: 3'- -GCgGGGCuCUGGU-G-GUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 135461 | 0.75 | 0.405391 |
Target: 5'- gGCaCgCCGAGACCcCCGC-CGCGGCACg -3' miRNA: 3'- gCG-G-GGCUCUGGuGGUGuGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 153113 | 0.75 | 0.408821 |
Target: 5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3' miRNA: 3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 128223 | 0.75 | 0.431555 |
Target: 5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3' miRNA: 3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 62272 | 0.75 | 0.431555 |
Target: 5'- cCGCCCCGcgcAGGCCgcGCCGCACACcuacuGCAg -3' miRNA: 3'- -GCGGGGC---UCUGG--UGGUGUGUGu----UGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 37744 | 0.75 | 0.449537 |
Target: 5'- gGCCCCGGGAgcgugaaguCCACCACcagcuGCGCgAGCGCc -3' miRNA: 3'- gCGGGGCUCU---------GGUGGUG-----UGUG-UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 56906 | 0.75 | 0.448628 |
Target: 5'- aGCCCUGGGcgcaggcGCCGCCGCACG--GCGCg -3' miRNA: 3'- gCGGGGCUC-------UGGUGGUGUGUguUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 18320 | 0.75 | 0.448628 |
Target: 5'- aGCCcgCCGcGACCACCGCccgcaggGCGCGGCGCg -3' miRNA: 3'- gCGG--GGCuCUGGUGGUG-------UGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 136304 | 0.75 | 0.446813 |
Target: 5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3' miRNA: 3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 19387 | 0.75 | 0.440494 |
Target: 5'- aGCCCCGGGgcACCAggaCGCGCGCGGuCACg -3' miRNA: 3'- gCGGGGCUC--UGGUg--GUGUGUGUU-GUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 5307 | 0.75 | 0.431555 |
Target: 5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3' miRNA: 3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 3334 | 0.75 | 0.431555 |
Target: 5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3' miRNA: 3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 103499 | 0.75 | 0.414001 |
Target: 5'- cCGCUCCGcGACgGCCGCGCGgAGCAUc -3' miRNA: 3'- -GCGGGGCuCUGgUGGUGUGUgUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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