miRNA display CGI


Results 81 - 100 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 136304 0.75 0.446813
Target:  5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3'
miRNA:   3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19387 0.75 0.440494
Target:  5'- aGCCCCGGGgcACCAggaCGCGCGCGGuCACg -3'
miRNA:   3'- gCGGGGCUC--UGGUg--GUGUGUGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 62272 0.75 0.431555
Target:  5'- cCGCCCCGcgcAGGCCgcGCCGCACACcuacuGCAg -3'
miRNA:   3'- -GCGGGGC---UCUGG--UGGUGUGUGu----UGUg -5'
21374 3' -56.4 NC_004812.1 + 34235 0.75 0.431555
Target:  5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3'
miRNA:   3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 36208 0.75 0.431555
Target:  5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 111047 0.75 0.431555
Target:  5'- gGCCgacucgugguaCCGGGACCACC-CGCGCAuGCGCg -3'
miRNA:   3'- gCGG-----------GGCUCUGGUGGuGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 128223 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 128727 0.75 0.440494
Target:  5'- uCGCCCCGGGcCCACCAC-C-CAGCu- -3'
miRNA:   3'- -GCGGGGCUCuGGUGGUGuGuGUUGug -5'
21374 3' -56.4 NC_004812.1 + 81380 0.75 0.414001
Target:  5'- gCGCgCCGAGGCCACCgAC-CGCGuCACg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGuGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 117820 0.75 0.422724
Target:  5'- gCGCCCCGcAGACCACgCGCGUGC-GCGCg -3'
miRNA:   3'- -GCGGGGC-UCUGGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 42529 0.75 0.449537
Target:  5'- cCGCCCCGGca-CACCACGCACAA-ACg -3'
miRNA:   3'- -GCGGGGCUcugGUGGUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 28017 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 27605 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 32693 0.74 0.458681
Target:  5'- cCGgCCCGGGACCGCgGgCGC-CAGCACc -3'
miRNA:   3'- -GCgGGGCUCUGGUGgU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 147514 0.74 0.466995
Target:  5'- gGCCCCGAGgcgccgucuucgcGCCGCCGC-CugGACGg -3'
miRNA:   3'- gCGGGGCUC-------------UGGUGGUGuGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 29683 0.74 0.467924
Target:  5'- aCGCCgCGAGAaaCCGCCagggACGCACGACGa -3'
miRNA:   3'- -GCGGgGCUCU--GGUGG----UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 153943 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 21600 0.74 0.477261
Target:  5'- cCGCCCCaGGGACUGgUACAC-CGACACc -3'
miRNA:   3'- -GCGGGG-CUCUGGUgGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126040 0.74 0.48669
Target:  5'- cCGCCCCGGGAgCCggaaggcgGCgACGCGCcGCGCg -3'
miRNA:   3'- -GCGGGGCUCU-GG--------UGgUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2829 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.