Results 121 - 140 of 796 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21374 | 3' | -56.4 | NC_004812.1 | + | 88383 | 0.73 | 0.519375 |
Target: 5'- gGCCCCGGcccccgcgcacccccGGCCgGCCGCGCGCGGC-Cg -3' miRNA: 3'- gCGGGGCU---------------CUGG-UGGUGUGUGUUGuG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 27727 | 0.73 | 0.505805 |
Target: 5'- cCGCCCuCGAGGCCuACUGCGCcCcGCGCg -3' miRNA: 3'- -GCGGG-GCUCUGG-UGGUGUGuGuUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 102095 | 0.73 | 0.535056 |
Target: 5'- gCGUCCguCGAGGCCGgC-CACGCGACGCu -3' miRNA: 3'- -GCGGG--GCUCUGGUgGuGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 25405 | 0.73 | 0.515483 |
Target: 5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3' miRNA: 3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 62052 | 0.73 | 0.515483 |
Target: 5'- gGCCCCGAGccccGCCACCAgggcCGC-CGACAg -3' miRNA: 3'- gCGGGGCUC----UGGUGGU----GUGuGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 148776 | 0.73 | 0.515483 |
Target: 5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3' miRNA: 3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 59377 | 0.73 | 0.535056 |
Target: 5'- gGCCCCGcaGGGCgCgagGCCcCACGCAGCGCg -3' miRNA: 3'- gCGGGGC--UCUG-G---UGGuGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 11639 | 0.73 | 0.535056 |
Target: 5'- gCGCUCCGuccAGACgcuCGCCGCGCACGGgGCg -3' miRNA: 3'- -GCGGGGC---UCUG---GUGGUGUGUGUUgUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 154806 | 0.73 | 0.525235 |
Target: 5'- gGCCCCGAcGuCCGCCAUGCuGCGGCGg -3' miRNA: 3'- gCGGGGCU-CuGGUGGUGUG-UGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 136025 | 0.73 | 0.514512 |
Target: 5'- cCGCCCgCGGGGCCaucggcgaggcggACCACGCGCuGAUGCu -3' miRNA: 3'- -GCGGG-GCUCUGG-------------UGGUGUGUG-UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 2223 | 0.73 | 0.525235 |
Target: 5'- gCGgCCCGcGGCCcaGCgCACGCGCGGCGCg -3' miRNA: 3'- -GCgGGGCuCUGG--UG-GUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 117875 | 0.73 | 0.515483 |
Target: 5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3' miRNA: 3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 123905 | 0.73 | 0.525235 |
Target: 5'- gGCCCCGAcGuCCGCCAUGCuGCGGCGg -3' miRNA: 3'- gCGGGGCU-CuGGUGGUGUG-UGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 68732 | 0.73 | 0.535056 |
Target: 5'- gGCCCCGAgGACCGCgggCAgACGCgAACGCc -3' miRNA: 3'- gCGGGGCU-CUGGUG---GUgUGUG-UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 55438 | 0.73 | 0.535056 |
Target: 5'- cCGgaCCCGAGGCCGCCGCcuucCGCAGCu- -3' miRNA: 3'- -GCg-GGGCUCUGGUGGUGu---GUGUUGug -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 74108 | 0.73 | 0.535056 |
Target: 5'- gCGCCCCGAgcuugucgguGACgGCCgggaaGCACACGACGu -3' miRNA: 3'- -GCGGGGCU----------CUGgUGG-----UGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 152131 | 0.73 | 0.554884 |
Target: 5'- uGCUUCGAGGCCucggGCGCGCGGCGCa -3' miRNA: 3'- gCGGGGCUCUGGugg-UGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 5234 | 0.73 | 0.554884 |
Target: 5'- gGCuCCCGGGAgaagcacaagacCCACaCACGCGCGGCAg -3' miRNA: 3'- gCG-GGGCUCU------------GGUG-GUGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 78476 | 0.73 | 0.554884 |
Target: 5'- gGCCUCGuGcGCCGCgAgGCGCGACACg -3' miRNA: 3'- gCGGGGCuC-UGGUGgUgUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 2583 | 0.73 | 0.554884 |
Target: 5'- cCGCCuCCGAcGCCGCCGcCGCcgACGGCACc -3' miRNA: 3'- -GCGG-GGCUcUGGUGGU-GUG--UGUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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