miRNA display CGI


Results 61 - 80 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 19007 0.76 0.388512
Target:  5'- cCGCCUCGaAGAUCACCAgGC-CGGCGCu -3'
miRNA:   3'- -GCGGGGC-UCUGGUGGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 30595 0.76 0.391851
Target:  5'- gCGCCCgCcgggggucgggcggcGGGACCGCCACcugACACAGCGCc -3'
miRNA:   3'- -GCGGG-G---------------CUCUGGUGGUG---UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 23069 0.76 0.396894
Target:  5'- gCGgCCCGcaugguGGCCACC-CACGCGACGCu -3'
miRNA:   3'- -GCgGGGCu-----CUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 68275 0.76 0.396894
Target:  5'- gGCCCCgGAGGCCGgCACGC-CAAuCACg -3'
miRNA:   3'- gCGGGG-CUCUGGUgGUGUGuGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 85094 0.76 0.396894
Target:  5'- gGCCgCCGAGGCCGuCCGCACccACGugACc -3'
miRNA:   3'- gCGG-GGCUCUGGU-GGUGUG--UGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 145307 0.75 0.405391
Target:  5'- cCGCCCCGcGG-CGCCcCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCuCUgGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 135461 0.75 0.405391
Target:  5'- gGCaCgCCGAGACCcCCGC-CGCGGCACg -3'
miRNA:   3'- gCG-G-GGCUCUGGuGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27605 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153113 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 56541 0.75 0.414001
Target:  5'- aGCCCCGAccCCACCGCGC-CAAC-Ca -3'
miRNA:   3'- gCGGGGCUcuGGUGGUGUGuGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 103499 0.75 0.414001
Target:  5'- cCGCUCCGcGACgGCCGCGCGgAGCAUc -3'
miRNA:   3'- -GCGGGGCuCUGgUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 81380 0.75 0.414001
Target:  5'- gCGCgCCGAGGCCACCgAC-CGCGuCACg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGuGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 153526 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 28017 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 117820 0.75 0.422724
Target:  5'- gCGCCCCGcAGACCACgCGCGUGC-GCGCg -3'
miRNA:   3'- -GCGGGGC-UCUGGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 144457 0.75 0.422724
Target:  5'- gGCCCCGAcGGCgCGCCGC-CcCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUG-GUGGUGuGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5307 0.75 0.431555
Target:  5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 3334 0.75 0.431555
Target:  5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3'
miRNA:   3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 128223 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 62272 0.75 0.431555
Target:  5'- cCGCCCCGcgcAGGCCgcGCCGCACACcuacuGCAg -3'
miRNA:   3'- -GCGGGGC---UCUGG--UGGUGUGUGu----UGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.