miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 58220 0.74 0.471648
Target:  5'- cCGCCCCGcGGCCGCCGCGCcgcccgaggacccguACcuGGCGCc -3'
miRNA:   3'- -GCGGGGCuCUGGUGGUGUG---------------UG--UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 20094 0.74 0.477261
Target:  5'- aCGCCUCgGAGgaGCgCGCCGCGCGCAGCGg -3'
miRNA:   3'- -GCGGGG-CUC--UG-GUGGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 21600 0.74 0.477261
Target:  5'- cCGCCCCaGGGACUGgUACAC-CGACACc -3'
miRNA:   3'- -GCGGGG-CUCUGGUgGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153943 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 84632 0.74 0.477261
Target:  5'- aGCCCCGGGGcgcgugagccucCCGCgGCGCGCGuCGCg -3'
miRNA:   3'- gCGGGGCUCU------------GGUGgUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 28435 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 2829 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126040 0.74 0.48669
Target:  5'- cCGCCCCGGGAgCCggaaggcgGCgACGCGCcGCGCg -3'
miRNA:   3'- -GCGGGGCUCU-GG--------UGgUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 33730 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 532 0.74 0.48669
Target:  5'- cCGCCCCGGGAgCCggaaggcgGCgACGCGCcGCGCg -3'
miRNA:   3'- -GCGGGGCUCU-GG--------UGgUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 89613 0.74 0.48669
Target:  5'- gGCCCCGAGGCCAUCuucaaGCACAu--- -3'
miRNA:   3'- gCGGGGCUCUGGUGGug---UGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 18650 0.74 0.48669
Target:  5'- cCGCCCCGAcgaggGGCCGCCGCGC-CGGgAa -3'
miRNA:   3'- -GCGGGGCU-----CUGGUGGUGUGuGUUgUg -5'
21374 3' -56.4 NC_004812.1 + 44655 0.74 0.49525
Target:  5'- cCGaCCCCGGcggggccGACuCGCCGCGCGCGACGa -3'
miRNA:   3'- -GC-GGGGCU-------CUG-GUGGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 55824 0.74 0.496206
Target:  5'- gGgCCCGAGGCCgGCCAcCGCACGAUcgGCg -3'
miRNA:   3'- gCgGGGCUCUGG-UGGU-GUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 27727 0.73 0.505805
Target:  5'- cCGCCCuCGAGGCCuACUGCGCcCcGCGCg -3'
miRNA:   3'- -GCGGG-GCUCUGG-UGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 73386 0.73 0.505805
Target:  5'- gCGCCCgGGGGCCACCGaggcccccgaGCGCGGC-Cg -3'
miRNA:   3'- -GCGGGgCUCUGGUGGUg---------UGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 153235 0.73 0.505805
Target:  5'- cCGCCCuCGAGGCCuACUGCGCcCcGCGCg -3'
miRNA:   3'- -GCGGG-GCUCUGG-UGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 56288 0.73 0.514512
Target:  5'- gGCCCgcuCGAGGgccugguCCAgCACGCGCAGCGCg -3'
miRNA:   3'- gCGGG---GCUCU-------GGUgGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136025 0.73 0.514512
Target:  5'- cCGCCCgCGGGGCCaucggcgaggcggACCACGCGCuGAUGCu -3'
miRNA:   3'- -GCGGG-GCUCUGG-------------UGGUGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 117875 0.73 0.515483
Target:  5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3'
miRNA:   3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.