miRNA display CGI


Results 121 - 140 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 70524 0.73 0.515483
Target:  5'- aCGCCUCGAucagGACCGCCAgCGCGCuGCGa -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGU-GUGUGuUGUg -5'
21374 3' -56.4 NC_004812.1 + 150913 0.73 0.515483
Target:  5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3'
miRNA:   3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 62052 0.73 0.515483
Target:  5'- gGCCCCGAGccccGCCACCAgggcCGC-CGACAg -3'
miRNA:   3'- gCGGGGCUC----UGGUGGU----GUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 25405 0.73 0.515483
Target:  5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3'
miRNA:   3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 148776 0.73 0.515483
Target:  5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3'
miRNA:   3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 80219 0.73 0.515483
Target:  5'- gCGCCCgCcGGGCCAUCGCGCGCcucGGCGCc -3'
miRNA:   3'- -GCGGG-GcUCUGGUGGUGUGUG---UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 88383 0.73 0.519375
Target:  5'- gGCCCCGGcccccgcgcacccccGGCCgGCCGCGCGCGGC-Cg -3'
miRNA:   3'- gCGGGGCU---------------CUGG-UGGUGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 123905 0.73 0.525235
Target:  5'- gGCCCCGAcGuCCGCCAUGCuGCGGCGg -3'
miRNA:   3'- gCGGGGCU-CuGGUGGUGUG-UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 154806 0.73 0.525235
Target:  5'- gGCCCCGAcGuCCGCCAUGCuGCGGCGg -3'
miRNA:   3'- gCGGGGCU-CuGGUGGUGUG-UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 2223 0.73 0.525235
Target:  5'- gCGgCCCGcGGCCcaGCgCACGCGCGGCGCg -3'
miRNA:   3'- -GCgGGGCuCUGG--UG-GUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 59377 0.73 0.535056
Target:  5'- gGCCCCGcaGGGCgCgagGCCcCACGCAGCGCg -3'
miRNA:   3'- gCGGGGC--UCUG-G---UGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55438 0.73 0.535056
Target:  5'- cCGgaCCCGAGGCCGCCGCcuucCGCAGCu- -3'
miRNA:   3'- -GCg-GGGCUCUGGUGGUGu---GUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 74108 0.73 0.535056
Target:  5'- gCGCCCCGAgcuugucgguGACgGCCgggaaGCACACGACGu -3'
miRNA:   3'- -GCGGGGCU----------CUGgUGG-----UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 68732 0.73 0.535056
Target:  5'- gGCCCCGAgGACCGCgggCAgACGCgAACGCc -3'
miRNA:   3'- gCGGGGCU-CUGGUG---GUgUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11639 0.73 0.535056
Target:  5'- gCGCUCCGuccAGACgcuCGCCGCGCACGGgGCg -3'
miRNA:   3'- -GCGGGGC---UCUG---GUGGUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 102095 0.73 0.535056
Target:  5'- gCGUCCguCGAGGCCGgC-CACGCGACGCu -3'
miRNA:   3'- -GCGGG--GCUCUGGUgGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 121145 0.73 0.544941
Target:  5'- gCGCgCCGAcGCCGCgGCGCuGCAGCGCu -3'
miRNA:   3'- -GCGgGGCUcUGGUGgUGUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 107199 0.73 0.544941
Target:  5'- gCGgCCCGGGGCCACgGCGCGgGcCGCc -3'
miRNA:   3'- -GCgGGGCUCUGGUGgUGUGUgUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 43820 0.73 0.544941
Target:  5'- aCGCCCgaCGGGggaGCCGCCGCGCggcucGCGGCGCc -3'
miRNA:   3'- -GCGGG--GCUC---UGGUGGUGUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 41131 0.73 0.544941
Target:  5'- cCGCCCgGcgcGGCCGCaCGCGCGCGGCGa -3'
miRNA:   3'- -GCGGGgCu--CUGGUG-GUGUGUGUUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.