miRNA display CGI


Results 141 - 160 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 9401 0.73 0.554884
Target:  5'- gCGCCCCGccuacAGAcCCACCA-GCACAuGCACg -3'
miRNA:   3'- -GCGGGGC-----UCU-GGUGGUgUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 152131 0.73 0.554884
Target:  5'- uGCUUCGAGGCCucggGCGCGCGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGGugg-UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5234 0.73 0.554884
Target:  5'- gGCuCCCGGGAgaagcacaagacCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCG-GGGCUCU------------GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 78476 0.73 0.554884
Target:  5'- gGCCUCGuGcGCCGCgAgGCGCGACACg -3'
miRNA:   3'- gCGGGGCuC-UGGUGgUgUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 33484 0.73 0.554884
Target:  5'- cCGCCuCCGAcGCCGCCGcCGCcgACGGCACc -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGU-GUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26623 0.73 0.554884
Target:  5'- uGCUUCGAGGCCucggGCGCGCGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGGugg-UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2583 0.73 0.554884
Target:  5'- cCGCCuCCGAcGCCGCCGcCGCcgACGGCACc -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGU-GUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 140102 0.73 0.554884
Target:  5'- gCGCCCau-GGCgGgCGCGCGCAGCACg -3'
miRNA:   3'- -GCGGGgcuCUGgUgGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 36135 0.73 0.554884
Target:  5'- gGCuCCCGGGAgaagcacaagacCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCG-GGGCUCU------------GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 73251 0.73 0.554884
Target:  5'- cCGCCCUGGGGCCGgCGCGgACccGACAg -3'
miRNA:   3'- -GCGGGGCUCUGGUgGUGUgUG--UUGUg -5'
21374 3' -56.4 NC_004812.1 + 131536 0.72 0.562876
Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3'
miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 6027 0.72 0.562876
Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3'
miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 85356 0.72 0.563878
Target:  5'- gCGCCCCGAGccggcccACCGCCGCcgucccCGCcGCGCc -3'
miRNA:   3'- -GCGGGGCUC-------UGGUGGUGu-----GUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 89403 0.72 0.564879
Target:  5'- aGCCCgCGGGcGCCGCCGC-CGCGGuCACc -3'
miRNA:   3'- gCGGG-GCUC-UGGUGGUGuGUGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 27303 0.72 0.564879
Target:  5'- gGCgCCGAGGCCGCCGuCGcCGCcguGCGCg -3'
miRNA:   3'- gCGgGGCUCUGGUGGU-GU-GUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 152811 0.72 0.564879
Target:  5'- gGCgCCGAGGCCGCCGuCGcCGCcguGCGCg -3'
miRNA:   3'- gCGgGGCUCUGGUGGU-GU-GUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 98254 0.72 0.564879
Target:  5'- gGCCCUgGAGGCCGggacCCGCGCGCuggugGACGCg -3'
miRNA:   3'- gCGGGG-CUCUGGU----GGUGUGUG-----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114355 0.72 0.573916
Target:  5'- aGCCUCcAGGCCugCuccccgaACACGCGACGCg -3'
miRNA:   3'- gCGGGGcUCUGGugG-------UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126437 0.72 0.574921
Target:  5'- gCGCgCCGAGcCCGCCGCGCGCu---- -3'
miRNA:   3'- -GCGgGGCUCuGGUGGUGUGUGuugug -5'
21374 3' -56.4 NC_004812.1 + 48352 0.72 0.574921
Target:  5'- aCGCCgCCGAGGgcuCCGCCGCGgACGcCGCc -3'
miRNA:   3'- -GCGG-GGCUCU---GGUGGUGUgUGUuGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.