miRNA display CGI


Results 161 - 180 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 76275 0.72 0.574921
Target:  5'- cCGCCUCGAcggcgcgcgcGGCCGCCuccagcaGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----------CUGGUGGug-----UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 48352 0.72 0.574921
Target:  5'- aCGCCgCCGAGGgcuCCGCCGCGgACGcCGCc -3'
miRNA:   3'- -GCGG-GGCUCU---GGUGGUGUgUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 81850 0.72 0.574921
Target:  5'- gGCCCuCGGGGCCGCgCGCGaGCAgcuGCGCg -3'
miRNA:   3'- gCGGG-GCUCUGGUG-GUGUgUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 142303 0.72 0.574921
Target:  5'- gGCCCCG-GGCCGgCGCGgCGgGGCGCg -3'
miRNA:   3'- gCGGGGCuCUGGUgGUGU-GUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 120957 0.72 0.574921
Target:  5'- aGCCCCc-GACCcCCGCGCGCGcccgcgGCACg -3'
miRNA:   3'- gCGGGGcuCUGGuGGUGUGUGU------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 929 0.72 0.574921
Target:  5'- gCGCgCCGAGcCCGCCGCGCGCu---- -3'
miRNA:   3'- -GCGgGGCUCuGGUGGUGUGUGuugug -5'
21374 3' -56.4 NC_004812.1 + 117344 0.72 0.57895
Target:  5'- gGCCCCGGcGGCCGCCGacgcgguggggcggcCGCgcccgGCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUGGUGGU---------------GUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 30247 0.72 0.57895
Target:  5'- gGCCgCUGGGgaaguGCCACCACgcccccgggcccaggGCGCAGCACg -3'
miRNA:   3'- gCGG-GGCUC-----UGGUGGUG---------------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148245 0.72 0.57895
Target:  5'- gGCCCCGGcGGCCGCCGacgcgguggggcggcCGCgcccgGCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUGGUGGU---------------GUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 20318 0.72 0.583994
Target:  5'- aGCgCCCGGGGCCGCgACGCgucgaguGCAGgGCg -3'
miRNA:   3'- gCG-GGGCUCUGGUGgUGUG-------UGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 137772 0.72 0.585004
Target:  5'- cCGCCaCCGGGcggcgcgcaACCGCCGCcCGCcGCACa -3'
miRNA:   3'- -GCGG-GGCUC---------UGGUGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 45226 0.72 0.585004
Target:  5'- uGCCcgCCGAuGACguCACCGCgACACAGCGCg -3'
miRNA:   3'- gCGG--GGCU-CUG--GUGGUG-UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2261 0.72 0.585004
Target:  5'- gGUCCgCGucGGCguCCGCGCGCAGCACg -3'
miRNA:   3'- gCGGG-GCu-CUGguGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 131742 0.72 0.585004
Target:  5'- gCGCCUCGAGgacgcccccgcaGCCgcGCCGCcCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCUC------------UGG--UGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 156185 0.72 0.585004
Target:  5'- gCGCgCgCGAGAgCGCCGCGCGCGgaaggccuGCGCg -3'
miRNA:   3'- -GCGgG-GCUCUgGUGGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 103788 0.72 0.585004
Target:  5'- cCGuCCCCcAGGCCACCACgucGCugGGCAg -3'
miRNA:   3'- -GC-GGGGcUCUGGUGGUG---UGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 73251 0.72 0.585004
Target:  5'- cCGCCCCcaggcGGGCCGCCA---GCAGCGCg -3'
miRNA:   3'- -GCGGGGc----UCUGGUGGUgugUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 127769 0.72 0.585004
Target:  5'- gGUCCgCGucGGCguCCGCGCGCAGCACg -3'
miRNA:   3'- gCGGG-GCu-CUGguGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 21018 0.72 0.585004
Target:  5'- gCGCCCCaccGGGCCguugagGCCGCGCAUgAGCGCg -3'
miRNA:   3'- -GCGGGGc--UCUGG------UGGUGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 125284 0.72 0.585004
Target:  5'- gCGCgCgCGAGAgCGCCGCGCGCGgaaggccuGCGCg -3'
miRNA:   3'- -GCGgG-GCUCUgGUGGUGUGUGU--------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.