miRNA display CGI


Results 81 - 100 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 112994 0.66 0.888306
Target:  5'- gGCgCCGcGGCCGCCgagGCAgAgGACGCa -3'
miRNA:   3'- gCGgGGCuCUGGUGG---UGUgUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 45959 0.66 0.888306
Target:  5'- cCGCCCaggcuGugCAgCACGCGCAGCu- -3'
miRNA:   3'- -GCGGGgcu--CugGUgGUGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 141487 0.66 0.888306
Target:  5'- uCGCCgUCGGGggcGCCGCCGUAC-CGGCGCa -3'
miRNA:   3'- -GCGG-GGCUC---UGGUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27443 0.66 0.888306
Target:  5'- aGCCCaguagcacgaUGAGGCCGCgCACGuuCAGCGCc -3'
miRNA:   3'- gCGGG----------GCUCUGGUG-GUGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 48981 0.66 0.888306
Target:  5'- uGCCCCGcGACgCgGCCGCAgACGugAa -3'
miRNA:   3'- gCGGGGCuCUG-G-UGGUGUgUGUugUg -5'
21374 3' -56.4 NC_004812.1 + 11753 0.66 0.888306
Target:  5'- gGCCgUGGGGCU-CCGCACGCucuccccGCGCg -3'
miRNA:   3'- gCGGgGCUCUGGuGGUGUGUGu------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 49788 0.66 0.888306
Target:  5'- gGCCCCGcGGGCCcucccgcgggGCC-CAguCGGCGCg -3'
miRNA:   3'- gCGGGGC-UCUGG----------UGGuGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 85397 0.66 0.888306
Target:  5'- gCGCCCgGGGGCCgcguuccucuACCugGCGuucaccuaccguCAGCGCc -3'
miRNA:   3'- -GCGGGgCUCUGG----------UGGugUGU------------GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 115693 0.66 0.888306
Target:  5'- aCGCgCCCGAGgcgaGCCcaggGCCAUggggACACGGCAa -3'
miRNA:   3'- -GCG-GGGCUC----UGG----UGGUG----UGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 127866 0.66 0.888306
Target:  5'- gGCgUCGGGcCCGgCGCGCGCGGCGu -3'
miRNA:   3'- gCGgGGCUCuGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 94835 0.66 0.888306
Target:  5'- uCGUCCUGGGGCaCGCCGC-CGCcGgACu -3'
miRNA:   3'- -GCGGGGCUCUG-GUGGUGuGUGuUgUG- -5'
21374 3' -56.4 NC_004812.1 + 43620 0.66 0.888306
Target:  5'- uGCCUCGGcGGCCGCgGCGcCGCGAUcCa -3'
miRNA:   3'- gCGGGGCU-CUGGUGgUGU-GUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 41193 0.66 0.888306
Target:  5'- cCGCgCCGGucGGCgCGCCGCGCGgGGCGg -3'
miRNA:   3'- -GCGgGGCU--CUG-GUGGUGUGUgUUGUg -5'
21374 3' -56.4 NC_004812.1 + 49523 0.66 0.887627
Target:  5'- aCGaCCCCcgucggcGAGGucaUCGCCGCcCACGACGCg -3'
miRNA:   3'- -GC-GGGG-------CUCU---GGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 131381 0.66 0.886263
Target:  5'- gGCCCCGAGGaggCGCUcgugagcgaGCACGCGuccugggcggacguGCGCg -3'
miRNA:   3'- gCGGGGCUCUg--GUGG---------UGUGUGU--------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 79503 0.66 0.8842
Target:  5'- cCGCCCCcgcgGGGGCaacgucauCGCCGCGCagcggaugcgaaacgACGACGCg -3'
miRNA:   3'- -GCGGGG----CUCUG--------GUGGUGUG---------------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 38565 0.66 0.8842
Target:  5'- uGCCgCGGGGggaagauccgcggguCCGCCugGCcCGGCGCg -3'
miRNA:   3'- gCGGgGCUCU---------------GGUGGugUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3628 0.66 0.881419
Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3'
miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 29878 0.66 0.881419
Target:  5'- gCGCCCCGcugucccccGACCACCucgugcagguggGC-CGCGAUGCg -3'
miRNA:   3'- -GCGGGGCu--------CUGGUGG------------UGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 108436 0.66 0.881419
Target:  5'- uCGaCgCCGAGGCCACCuu-CGCGAucCACa -3'
miRNA:   3'- -GC-GgGGCUCUGGUGGuguGUGUU--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.