miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 80592 0.66 0.881419
Target:  5'- gGCCCUG-GACCgcguggagaACCGCGCcgaguuCGACGCc -3'
miRNA:   3'- gCGGGGCuCUGG---------UGGUGUGu-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 34529 0.66 0.881419
Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3'
miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 78685 0.66 0.881419
Target:  5'- -aCCCCGA-ACCGCUGC-UGCAGCGCa -3'
miRNA:   3'- gcGGGGCUcUGGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 31206 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 97374 0.66 0.881419
Target:  5'- gGCCUCacgGAGGCCaACCACGC-CAuguCGCu -3'
miRNA:   3'- gCGGGG---CUCUGG-UGGUGUGuGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 131828 0.66 0.881419
Target:  5'- uCGCCCUGAucAUCACCccgguGCGCAuCGACGCc -3'
miRNA:   3'- -GCGGGGCUc-UGGUGG-----UGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 103715 0.66 0.881419
Target:  5'- aCGCCCuCGAGcCCugCACcgucgguCACcGGCGCu -3'
miRNA:   3'- -GCGGG-GCUCuGGugGUGu------GUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5994 0.66 0.881419
Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 48550 0.66 0.881419
Target:  5'- cCGCCgCCGAcuucccccUCACCGCcCGCAGCGCc -3'
miRNA:   3'- -GCGG-GGCUcu------GGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 42294 0.66 0.881419
Target:  5'- gCGCCCCGcguccguuccuGGgCGCCGC-CAUGGCGCu -3'
miRNA:   3'- -GCGGGGCu----------CUgGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 50582 0.66 0.881419
Target:  5'- gCGCCggcggcaggCCGGGAUCGCCGgGCACAc--- -3'
miRNA:   3'- -GCGG---------GGCUCUGGUGGUgUGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 108436 0.66 0.881419
Target:  5'- uCGaCgCCGAGGCCACCuu-CGCGAucCACa -3'
miRNA:   3'- -GC-GgGGCUCUGGUGGuguGUGUU--GUG- -5'
21374 3' -56.4 NC_004812.1 + 66602 0.66 0.881419
Target:  5'- cCGgCCCGcGGGCCGCUcCACGCccaggccgucGGCACg -3'
miRNA:   3'- -GCgGGGC-UCUGGUGGuGUGUG----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 65035 0.66 0.881419
Target:  5'- gGCCCUGGucGACCugCuguuuUACgACGACGCg -3'
miRNA:   3'- gCGGGGCU--CUGGugGu----GUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 57077 0.66 0.881419
Target:  5'- gGCUCCGAcACCGCguCGCcguccgucgGCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGguGUG---------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114829 0.66 0.881419
Target:  5'- gGCcgCCCGAG-CgGCCGagGCGCGGCGCg -3'
miRNA:   3'- gCG--GGGCUCuGgUGGUg-UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 305 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143334 0.66 0.881419
Target:  5'- cCGCgCCGAGGCCuccGCCGC-CcCGACGu -3'
miRNA:   3'- -GCGgGGCUCUGG---UGGUGuGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 73302 0.66 0.881419
Target:  5'- aGCCCuCGGGGaacaugCACgAC-CACAGCGCg -3'
miRNA:   3'- gCGGG-GCUCUg-----GUGgUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 20583 0.66 0.881419
Target:  5'- cCGCCUCGccgauGGCC-CCGCGgGCGGgGCg -3'
miRNA:   3'- -GCGGGGCu----CUGGuGGUGUgUGUUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.