miRNA display CGI


Results 121 - 140 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 57077 0.66 0.881419
Target:  5'- gGCUCCGAcACCGCguCGCcguccgucgGCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGguGUG---------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 50582 0.66 0.881419
Target:  5'- gCGCCggcggcaggCCGGGAUCGCCGgGCACAc--- -3'
miRNA:   3'- -GCGG---------GGCUCUGGUGGUgUGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 20583 0.66 0.881419
Target:  5'- cCGCCUCGccgauGGCC-CCGCGgGCGGgGCg -3'
miRNA:   3'- -GCGGGGCu----CUGGuGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 73302 0.66 0.881419
Target:  5'- aGCCCuCGGGGaacaugCACgAC-CACAGCGCg -3'
miRNA:   3'- gCGGG-GCUCUg-----GUGgUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 106025 0.66 0.881419
Target:  5'- gCGaUCCUGAucGCCGCCAacgGCGCGACGCa -3'
miRNA:   3'- -GC-GGGGCUc-UGGUGGUg--UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 131503 0.66 0.881419
Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 75477 0.66 0.881419
Target:  5'- uGCUCCGcGGCCGCgGCcagguccaGCGGCACg -3'
miRNA:   3'- gCGGGGCuCUGGUGgUGug------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 29997 0.66 0.881419
Target:  5'- uCGCCCuCGAuGGCCAggaCGCGCugGGC-Ca -3'
miRNA:   3'- -GCGGG-GCU-CUGGUg--GUGUGugUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 31529 0.66 0.881419
Target:  5'- gCGCCCgGAGGCacgcgguCUGCACGCGagcgacgaACGCg -3'
miRNA:   3'- -GCGGGgCUCUGgu-----GGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 3628 0.66 0.881419
Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3'
miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 29878 0.66 0.881419
Target:  5'- gCGCCCCGcugucccccGACCACCucgugcagguggGC-CGCGAUGCg -3'
miRNA:   3'- -GCGGGGCu--------CUGGUGG------------UGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 83089 0.66 0.880718
Target:  5'- cCGCCCCc-GGCCACCggccuccuguucgGCACGCGccuggcggacugGCGCc -3'
miRNA:   3'- -GCGGGGcuCUGGUGG-------------UGUGUGU------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 126241 0.66 0.880015
Target:  5'- cCGCCCCuccccucccCCGCCGCGCGCGccuCGCc -3'
miRNA:   3'- -GCGGGGcucu-----GGUGGUGUGUGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 733 0.66 0.880015
Target:  5'- cCGCCCCuccccucccCCGCCGCGCGCGccuCGCc -3'
miRNA:   3'- -GCGGGGcucu-----GGUGGUGUGUGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 100718 0.66 0.87931
Target:  5'- gGCCCUcAuccgcgcgugcuacGACCACCAcCugACGACGCc -3'
miRNA:   3'- gCGGGGcU--------------CUGGUGGU-GugUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 50043 0.67 0.877182
Target:  5'- gGCCCCcuggcgauuaacguGGACCACCGCGCcCGcugcgaggugggGCGCg -3'
miRNA:   3'- gCGGGGc-------------UCUGGUGGUGUGuGU------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 127017 0.67 0.874314
Target:  5'- cCGgCCCGc-GCCGCCGCGCGagGGCAUg -3'
miRNA:   3'- -GCgGGGCucUGGUGGUGUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 32170 0.67 0.874314
Target:  5'- gCGCCCCcgcgcGGACCgggugccuccggGCCACGuC-CAGCACg -3'
miRNA:   3'- -GCGGGGc----UCUGG------------UGGUGU-GuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 104993 0.67 0.874314
Target:  5'- gGCCgCG-GGCCGCCGCgGCGCcccuCGCg -3'
miRNA:   3'- gCGGgGCuCUGGUGGUG-UGUGuu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 100624 0.67 0.874314
Target:  5'- gCGCCggCCaGGAUCGCgCGCACgGCGGCGCg -3'
miRNA:   3'- -GCGG--GGcUCUGGUG-GUGUG-UGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.