miRNA display CGI


Results 141 - 160 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 40417 0.67 0.874314
Target:  5'- gGCCgCGuAGuagcCCGCCACGgcgcuCGCAACGCa -3'
miRNA:   3'- gCGGgGC-UCu---GGUGGUGU-----GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 44288 0.67 0.874314
Target:  5'- cCGCCuCCGcGGCCAgCCGCccgagGCGCGACuCg -3'
miRNA:   3'- -GCGG-GGCuCUGGU-GGUG-----UGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 100281 0.67 0.874314
Target:  5'- gGCCCgGGGGCCGa-GCACG-GACGCg -3'
miRNA:   3'- gCGGGgCUCUGGUggUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100624 0.67 0.874314
Target:  5'- gCGCCggCCaGGAUCGCgCGCACgGCGGCGCg -3'
miRNA:   3'- -GCGG--GGcUCUGGUG-GUGUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 104993 0.67 0.874314
Target:  5'- gGCCgCG-GGCCGCCGCgGCGCcccuCGCg -3'
miRNA:   3'- gCGGgGCuCUGGUGGUG-UGUGuu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 127017 0.67 0.874314
Target:  5'- cCGgCCCGc-GCCGCCGCGCGagGGCAUg -3'
miRNA:   3'- -GCgGGGCucUGGUGGUGUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 62504 0.67 0.874314
Target:  5'- gGCCCCGcaccaGGGCCAgggCGCACGCgAGCGg -3'
miRNA:   3'- gCGGGGC-----UCUGGUg--GUGUGUG-UUGUg -5'
21374 3' -56.4 NC_004812.1 + 32170 0.67 0.874314
Target:  5'- gCGCCCCcgcgcGGACCgggugccuccggGCCACGuC-CAGCACg -3'
miRNA:   3'- -GCGGGGc----UCUGG------------UGGUGU-GuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55562 0.67 0.874314
Target:  5'- gGCCaCCGGGGCC-CUGCugGCccgcguGCACc -3'
miRNA:   3'- gCGG-GGCUCUGGuGGUGugUGu-----UGUG- -5'
21374 3' -56.4 NC_004812.1 + 56644 0.67 0.874314
Target:  5'- gGCCCCcgccggcacGGcCCACCG-GCACGACGCg -3'
miRNA:   3'- gCGGGGc--------UCuGGUGGUgUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 56135 0.67 0.874314
Target:  5'- gCGCUCCG-GGCgGCCGCGCcccucuacgcccGCAcCACg -3'
miRNA:   3'- -GCGGGGCuCUGgUGGUGUG------------UGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 49885 0.67 0.874314
Target:  5'- gGCCUCGucGCCcucGCCGCcaGCAGCACg -3'
miRNA:   3'- gCGGGGCucUGG---UGGUGugUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1509 0.67 0.874314
Target:  5'- cCGgCCCGc-GCCGCCGCGCGagGGCAUg -3'
miRNA:   3'- -GCgGGGCucUGGUGGUGUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 110094 0.67 0.874314
Target:  5'- gGCCCCGuGGGCCcCCcCGgGgGGCGCg -3'
miRNA:   3'- gCGGGGC-UCUGGuGGuGUgUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 155877 0.67 0.874314
Target:  5'- cCGCCCCcacccccgccGGCgACCGCGC-CGGCGCc -3'
miRNA:   3'- -GCGGGGcu--------CUGgUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 137872 0.67 0.874314
Target:  5'- gCGCCgCGAGuaccCCGCCGuCGCGagGACGCu -3'
miRNA:   3'- -GCGGgGCUCu---GGUGGU-GUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 65408 0.67 0.874314
Target:  5'- uGCCacaCG-GACCugCACcccaACAACACg -3'
miRNA:   3'- gCGGg--GCuCUGGugGUGug--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 80323 0.67 0.874314
Target:  5'- gCGCugCUgGAGGCgGCCGCGCGCGccgucgaggcgGCGCg -3'
miRNA:   3'- -GCG--GGgCUCUGgUGGUGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 1188 0.67 0.874314
Target:  5'- cCGUCgCCGucGCCGCCGC-CACcACGCc -3'
miRNA:   3'- -GCGG-GGCucUGGUGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 124976 0.67 0.874314
Target:  5'- cCGCCCCcacccccgccGGCgACCGCGC-CGGCGCc -3'
miRNA:   3'- -GCGGGGcu--------CUGgUGGUGUGuGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.