miRNA display CGI


Results 61 - 80 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 10878 0.7 0.706503
Target:  5'- gCGCCCCGGG-UCGCCGCGuucgggcgucCGuCAGCGCc -3'
miRNA:   3'- -GCGGGGCUCuGGUGGUGU----------GU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11062 0.72 0.59512
Target:  5'- cCGaCCCCGGGACCAgCGCGaacCGgGGCGCc -3'
miRNA:   3'- -GC-GGGGCUCUGGUgGUGU---GUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11289 0.83 0.138982
Target:  5'- aCGCCCaCGAGGCgCGCCGCGCGgGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUG-GUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11312 0.7 0.706503
Target:  5'- gGCCcaCCGGGcCCGCCACAcCGC-ACACc -3'
miRNA:   3'- gCGG--GGCUCuGGUGGUGU-GUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11348 0.68 0.792494
Target:  5'- uGCCCgGAGcCCACCG-ACAgaAACACg -3'
miRNA:   3'- gCGGGgCUCuGGUGGUgUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11639 0.73 0.535056
Target:  5'- gCGCUCCGuccAGACgcuCGCCGCGCACGGgGCg -3'
miRNA:   3'- -GCGGGGC---UCUG---GUGGUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 11753 0.66 0.888306
Target:  5'- gGCCgUGGGGCU-CCGCACGCucuccccGCGCg -3'
miRNA:   3'- gCGGgGCUCUGGuGGUGUGUGu------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 12146 0.67 0.843803
Target:  5'- gGCgCCGGGcCCGCUcaAUACACAaugaGCACg -3'
miRNA:   3'- gCGgGGCUCuGGUGG--UGUGUGU----UGUG- -5'
21374 3' -56.4 NC_004812.1 + 12441 0.83 0.14259
Target:  5'- uCGUCUCGAuGGCCGCCGCGCACAcACACg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 12555 0.66 0.907
Target:  5'- gGCCCCcGGcggcgugccGCCGCCGCACcuccuccGCgAACGCg -3'
miRNA:   3'- gCGGGGcUC---------UGGUGGUGUG-------UG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 12980 0.71 0.645958
Target:  5'- cCGCgCCCGGGGCCGCgCuCGCGCucuCGCc -3'
miRNA:   3'- -GCG-GGGCUCUGGUG-GuGUGUGuu-GUG- -5'
21374 3' -56.4 NC_004812.1 + 13145 0.66 0.901405
Target:  5'- uGCCgCCGGcGACaGCgACGCGCGAgACa -3'
miRNA:   3'- gCGG-GGCU-CUGgUGgUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 13222 0.69 0.774158
Target:  5'- uCGCCCUGGGucuUCACgAagcugucguCGCGCAGCACg -3'
miRNA:   3'- -GCGGGGCUCu--GGUGgU---------GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 13980 0.66 0.90761
Target:  5'- gGCCCCGGcGGCCAggagcgaguCCG-ACACGAgGCu -3'
miRNA:   3'- gCGGGGCU-CUGGU---------GGUgUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 14223 0.67 0.835684
Target:  5'- cCGcCCCCGGcGGCCACgGCGCGCcggGugAUg -3'
miRNA:   3'- -GC-GGGGCU-CUGGUGgUGUGUG---UugUG- -5'
21374 3' -56.4 NC_004812.1 + 14342 0.68 0.815465
Target:  5'- aGCUCCGGGAgCCgcacgugcuugccgGCCGCGCgggcgcgGCGGCGCa -3'
miRNA:   3'- gCGGGGCUCU-GG--------------UGGUGUG-------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 14426 0.71 0.656125
Target:  5'- aGCCCCGcgccGGCCAgCGCGC-CAACGa -3'
miRNA:   3'- gCGGGGCu---CUGGUgGUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 14464 0.76 0.356169
Target:  5'- uCGCCCCGG--UCACCACGCAgucCAGCACc -3'
miRNA:   3'- -GCGGGGCUcuGGUGGUGUGU---GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 14607 0.69 0.774158
Target:  5'- aCGUCCCGGaACCACUGCAgcCGgGGCACc -3'
miRNA:   3'- -GCGGGGCUcUGGUGGUGU--GUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 14857 0.71 0.635781
Target:  5'- cCGCCCCGcGGCCGCC-CG-ACGACGg -3'
miRNA:   3'- -GCGGGGCuCUGGUGGuGUgUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.