miRNA display CGI


Results 81 - 100 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 15146 0.66 0.881419
Target:  5'- uCGCCUCGGGGgCuCCcCGCACGACc- -3'
miRNA:   3'- -GCGGGGCUCUgGuGGuGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 15426 0.67 0.835684
Target:  5'- cCGCCCCG-GGCCuCCgggaGCugGC-GCGCg -3'
miRNA:   3'- -GCGGGGCuCUGGuGG----UGugUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 15526 0.67 0.859465
Target:  5'- gCGCgUgCGuGACCccGCCgGCGCGCAGCGCg -3'
miRNA:   3'- -GCG-GgGCuCUGG--UGG-UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 15669 0.68 0.792494
Target:  5'- aCGCCCgCGucuGCCGCCuu-CGCAACGCc -3'
miRNA:   3'- -GCGGG-GCuc-UGGUGGuguGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 15963 0.66 0.881419
Target:  5'- gGCgCgUGGcGCCGCCGCGCgGCGGCGCg -3'
miRNA:   3'- gCG-GgGCUcUGGUGGUGUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 15992 0.71 0.666272
Target:  5'- cCGaCCCCGcGGCC-CCGCGCcaGCAGCAg -3'
miRNA:   3'- -GC-GGGGCuCUGGuGGUGUG--UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 16170 0.67 0.874314
Target:  5'- gCGCgCCCGAcugggggcgcucGAUCGCCagcaGCGCGCGGCGg -3'
miRNA:   3'- -GCG-GGGCU------------CUGGUGG----UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 16487 0.66 0.906387
Target:  5'- uCGCCCCGuacuucgcguccGugCugCGCGCGCccgccaugGGCGCg -3'
miRNA:   3'- -GCGGGGCu-----------CugGugGUGUGUG--------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 16755 0.7 0.706503
Target:  5'- gCGCCCCGGGG--GCCGCGgGCccgaaGACGCg -3'
miRNA:   3'- -GCGGGGCUCUggUGGUGUgUG-----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 16865 0.67 0.86625
Target:  5'- gGCCCCGGGACCGgcguggcCCGuCGCGgGugGa -3'
miRNA:   3'- gCGGGGCUCUGGU-------GGU-GUGUgUugUg -5'
21374 3' -56.4 NC_004812.1 + 17035 0.71 0.625601
Target:  5'- uGCCCCGAcGACgcgcuCAUCGCAUcCGACGCg -3'
miRNA:   3'- gCGGGGCU-CUG-----GUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 17052 0.71 0.635781
Target:  5'- gCGCCUCGGucccGGCCGCCGCGgAC-GCGCc -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUgUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 17309 0.66 0.894968
Target:  5'- cCGCCCUc-GGCCGCCGCAC-Cu-CGCc -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUGuGuuGUG- -5'
21374 3' -56.4 NC_004812.1 + 17892 0.7 0.706503
Target:  5'- aCGCCgCGGGcCCGCCGCGCccGCGgucguccggGCGCg -3'
miRNA:   3'- -GCGGgGCUCuGGUGGUGUG--UGU---------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 18086 0.78 0.2773
Target:  5'- aGCCgCCGuccGGGCCGCCGCACACGcggacgACGCg -3'
miRNA:   3'- gCGG-GGC---UCUGGUGGUGUGUGU------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 18320 0.75 0.448628
Target:  5'- aGCCcgCCGcGACCACCGCccgcaggGCGCGGCGCg -3'
miRNA:   3'- gCGG--GGCuCUGGUGGUG-------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18491 0.67 0.866993
Target:  5'- gGCCCagacacaggcaGAcGACCGCCGCGaggaGCGACAg -3'
miRNA:   3'- gCGGGg----------CU-CUGGUGGUGUg---UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 18570 0.71 0.615426
Target:  5'- cCGCUCCGccGCCGCCGC-CGCcGCACc -3'
miRNA:   3'- -GCGGGGCucUGGUGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18607 0.68 0.783393
Target:  5'- gCGUCCCGGGGguCCACguucaGCACGCcccaGACGCg -3'
miRNA:   3'- -GCGGGGCUCU--GGUGg----UGUGUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18650 0.74 0.48669
Target:  5'- cCGCCCCGAcgaggGGCCGCCGCGC-CGGgAa -3'
miRNA:   3'- -GCGGGGCU-----CUGGUGGUGUGuGUUgUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.