miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 18652 0.67 0.866993
Target:  5'- cCGUCuCCGcAGACgGCCAUgucCACGGCGCc -3'
miRNA:   3'- -GCGG-GGC-UCUGgUGGUGu--GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18999 0.67 0.843803
Target:  5'- aGCagCCgGAGGCCcgcgGCCGCgggccgGCGCAGCGCg -3'
miRNA:   3'- gCG--GGgCUCUGG----UGGUG------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19007 0.76 0.388512
Target:  5'- cCGCCUCGaAGAUCACCAgGC-CGGCGCu -3'
miRNA:   3'- -GCGGGGC-UCUGGUGGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19387 0.75 0.440494
Target:  5'- aGCCCCGGGgcACCAggaCGCGCGCGGuCACg -3'
miRNA:   3'- gCGGGGCUC--UGGUg--GUGUGUGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 19820 0.76 0.372101
Target:  5'- gCGCUCCaGGGCCACCAgCGCGC-ACGCg -3'
miRNA:   3'- -GCGGGGcUCUGGUGGU-GUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19916 0.69 0.764798
Target:  5'- cCGCgCCGccGCCACCGCGC-CGGCGg -3'
miRNA:   3'- -GCGgGGCucUGGUGGUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 19927 0.68 0.789778
Target:  5'- aCGCCCCGGGGCgGauuauaaaagguguCCggaggaACACGCAGCGg -3'
miRNA:   3'- -GCGGGGCUCUGgU--------------GG------UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 20046 0.67 0.843803
Target:  5'- gCGUCCCGguAGGCCAUCAgGCcccGCGucGCGCg -3'
miRNA:   3'- -GCGGGGC--UCUGGUGGUgUG---UGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 20094 0.74 0.477261
Target:  5'- aCGCCUCgGAGgaGCgCGCCGCGCGCAGCGg -3'
miRNA:   3'- -GCGGGG-CUC--UG-GUGGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 20258 0.68 0.824011
Target:  5'- aGCUCCGAGAgCGCCGCcucuaggACgaggucggggguggGCGGCGCg -3'
miRNA:   3'- gCGGGGCUCUgGUGGUG-------UG--------------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 20318 0.72 0.583994
Target:  5'- aGCgCCCGGGGCCGCgACGCgucgaguGCAGgGCg -3'
miRNA:   3'- gCG-GGGCUCUGGUGgUGUG-------UGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 20583 0.66 0.881419
Target:  5'- cCGCCUCGccgauGGCC-CCGCGgGCGGgGCg -3'
miRNA:   3'- -GCGGGGCu----CUGGuGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 21018 0.72 0.585004
Target:  5'- gCGCCCCaccGGGCCguugagGCCGCGCAUgAGCGCg -3'
miRNA:   3'- -GCGGGGc--UCUGG------UGGUGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 21390 0.71 0.645958
Target:  5'- cCGCgCCGcGGCCgucucGCCGCGCGcCGACGCg -3'
miRNA:   3'- -GCGgGGCuCUGG-----UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 21600 0.74 0.477261
Target:  5'- cCGCCCCaGGGACUGgUACAC-CGACACc -3'
miRNA:   3'- -GCGGGG-CUCUGGUgGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 21784 0.67 0.859465
Target:  5'- -cCCCCGGGGCgCGCCAUucgcCGCggUACc -3'
miRNA:   3'- gcGGGGCUCUG-GUGGUGu---GUGuuGUG- -5'
21374 3' -56.4 NC_004812.1 + 22489 0.71 0.650027
Target:  5'- -uCCCCGAccccaucggcgcgcgGACCACCGuCACGCAcCGCg -3'
miRNA:   3'- gcGGGGCU---------------CUGGUGGU-GUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 23069 0.76 0.396894
Target:  5'- gCGgCCCGcaugguGGCCACC-CACGCGACGCu -3'
miRNA:   3'- -GCgGGGCu-----CUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 23290 0.68 0.792494
Target:  5'- gGCCCCGAcccACCACCGCAU-CGugGg -3'
miRNA:   3'- gCGGGGCUc--UGGUGGUGUGuGUugUg -5'
21374 3' -56.4 NC_004812.1 + 23614 0.71 0.635781
Target:  5'- gCGCCCCGGucguccgcgcGGCCGCCgggGCGCGCGGucccCGCg -3'
miRNA:   3'- -GCGGGGCU----------CUGGUGG---UGUGUGUU----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.