miRNA display CGI


Results 121 - 140 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 23734 0.71 0.635781
Target:  5'- cCGCaCCCGcuucuuCCGCCACauGCGCGACACc -3'
miRNA:   3'- -GCG-GGGCucu---GGUGGUG--UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 24076 0.67 0.869947
Target:  5'- gCGuCCCCGGGGgaaaugugcgccgacCCGCCGCGgcgauguucgUGCGACGCg -3'
miRNA:   3'- -GC-GGGGCUCU---------------GGUGGUGU----------GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 24831 0.7 0.696517
Target:  5'- uCGaCCCCcGGAUCGCgGCACGCGcCGCg -3'
miRNA:   3'- -GC-GGGGcUCUGGUGgUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 25081 0.69 0.774158
Target:  5'- gGCUCCucgacGGGgcggcGCCGCCGCGCGcCGACGCg -3'
miRNA:   3'- gCGGGG-----CUC-----UGGUGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25262 0.67 0.859465
Target:  5'- -uCCCCGGGGCgaaaUACCGCACGCcGgGCc -3'
miRNA:   3'- gcGGGGCUCUG----GUGGUGUGUGuUgUG- -5'
21374 3' -56.4 NC_004812.1 + 25378 0.69 0.764798
Target:  5'- gCGUCCgCGGGAUCgaacgcguACUugGCGCGGCACu -3'
miRNA:   3'- -GCGGG-GCUCUGG--------UGGugUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25405 0.73 0.515483
Target:  5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3'
miRNA:   3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 25488 0.67 0.835684
Target:  5'- gGCCCCGGuuCUACUACgACGCGGCcucGCa -3'
miRNA:   3'- gCGGGGCUcuGGUGGUG-UGUGUUG---UG- -5'
21374 3' -56.4 NC_004812.1 + 25522 0.7 0.706503
Target:  5'- gCGUCCaUGAgGACC-CCGCACGCGuGCACg -3'
miRNA:   3'- -GCGGG-GCU-CUGGuGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 25715 0.67 0.843803
Target:  5'- aCGCCCCc-GGCC-CCGCGcCGCGACuCg -3'
miRNA:   3'- -GCGGGGcuCUGGuGGUGU-GUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 25753 0.67 0.874314
Target:  5'- gGcCCCCGGGGCCcCCAC-UugAGCGu -3'
miRNA:   3'- gC-GGGGCUCUGGuGGUGuGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 25772 0.67 0.859465
Target:  5'- cCGaCCCCGGGcggcGCCcCgGCGgACGACGCg -3'
miRNA:   3'- -GC-GGGGCUC----UGGuGgUGUgUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25867 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26180 0.67 0.866993
Target:  5'- cCGCCuCCGcGGGCCGCaGCGagcgGCGGCGCg -3'
miRNA:   3'- -GCGG-GGC-UCUGGUGgUGUg---UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26356 0.68 0.792494
Target:  5'- gGCgCCGAG-CCGCCGCcccCGgGGCGCg -3'
miRNA:   3'- gCGgGGCUCuGGUGGUGu--GUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26454 0.71 0.625601
Target:  5'- gCGCUaCGAGGCCGCCgGCGCGCccGCGCc -3'
miRNA:   3'- -GCGGgGCUCUGGUGG-UGUGUGu-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 26623 0.73 0.554884
Target:  5'- uGCUUCGAGGCCucggGCGCGCGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGGugg-UGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26827 0.67 0.859465
Target:  5'- gCGCCCCugcuggcgcgcGAGAaCGCCGC-CGCGGCGg -3'
miRNA:   3'- -GCGGGG-----------CUCUgGUGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 26936 0.7 0.686477
Target:  5'- gCGCCgCGGGcUCAUCGcCGCGCAGCGCc -3'
miRNA:   3'- -GCGGgGCUCuGGUGGU-GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 26965 0.67 0.843803
Target:  5'- uGCCCCaGGGGgCGCCcCGCGaacuCGGCGCg -3'
miRNA:   3'- gCGGGG-CUCUgGUGGuGUGU----GUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.