miRNA display CGI


Results 141 - 160 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 27195 0.69 0.755321
Target:  5'- gGCCCCGccgccgcGCCGCCGCGC-CcGCGCc -3'
miRNA:   3'- gCGGGGCuc-----UGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27303 0.72 0.564879
Target:  5'- gGCgCCGAGGCCGCCGuCGcCGCcguGCGCg -3'
miRNA:   3'- gCGgGGCUCUGGUGGU-GU-GUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 27324 0.69 0.773228
Target:  5'- gGCCCCGAuggccggGAUCACCaggggguugucgGCGCGCGGCcCa -3'
miRNA:   3'- gCGGGGCU-------CUGGUGG------------UGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 27343 0.66 0.901405
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27443 0.66 0.888306
Target:  5'- aGCCCaguagcacgaUGAGGCCGCgCACGuuCAGCGCc -3'
miRNA:   3'- gCGGG----------GCUCUGGUG-GUGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27475 0.67 0.851732
Target:  5'- gCGCCgCGcGcCCGCCGgCGCGCAAgCGCa -3'
miRNA:   3'- -GCGGgGCuCuGGUGGU-GUGUGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 27529 0.66 0.901405
Target:  5'- cCGCCgCCGccGCCGCCugccCGC-CGGCGCg -3'
miRNA:   3'- -GCGG-GGCucUGGUGGu---GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27605 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27688 0.8 0.229153
Target:  5'- uGCCgCCGGGGCCcaGCCACACGcCGGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGG--UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27727 0.73 0.505805
Target:  5'- cCGCCCuCGAGGCCuACUGCGCcCcGCGCg -3'
miRNA:   3'- -GCGGG-GCUCUGG-UGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27787 0.71 0.666272
Target:  5'- -uCCCCGAGGCC-UgGCGCGCcGCGCu -3'
miRNA:   3'- gcGGGGCUCUGGuGgUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27898 0.7 0.695515
Target:  5'- gCGCCUCGGGcccgcugcgccgcGCCGCCGC-CugGAUGCg -3'
miRNA:   3'- -GCGGGGCUC-------------UGGUGGUGuGugUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27928 0.68 0.816327
Target:  5'- gCGCCCCgccucccgGAGACCGCCgGC-CACcggaccggauguggGACGCg -3'
miRNA:   3'- -GCGGGG--------CUCUGGUGG-UGuGUG--------------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28017 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 28356 0.69 0.755321
Target:  5'- aCGUCCgCuGGcCCGCCGCGCGCGACcuGCg -3'
miRNA:   3'- -GCGGG-GcUCuGGUGGUGUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 28435 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 28475 0.67 0.843803
Target:  5'- cCGCCgCCGcgccuGGGCCGCgGCGC-CAACGu -3'
miRNA:   3'- -GCGG-GGC-----UCUGGUGgUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 28556 0.67 0.843803
Target:  5'- cCGCCgCgCGAGuACCGCCGCGC-CGugcugcccGCGCu -3'
miRNA:   3'- -GCGG-G-GCUC-UGGUGGUGUGuGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 28617 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28764 0.69 0.764798
Target:  5'- aCGCCCU---GCCGCC-CGCGCuGCGCg -3'
miRNA:   3'- -GCGGGGcucUGGUGGuGUGUGuUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.