miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 151375 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 151280 0.67 0.859465
Target:  5'- cCGaCCCCGGGcggcGCCcCgGCGgACGACGCg -3'
miRNA:   3'- -GC-GGGGCUC----UGGuGgUGUgUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 151223 0.67 0.843803
Target:  5'- aCGCCCCc-GGCC-CCGCGcCGCGACuCg -3'
miRNA:   3'- -GCGGGGcuCUGGuGGUGU-GUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 151082 0.67 0.835684
Target:  5'- gGCCCCcGGcCCGCCGugucccugcUGCGCGGCGCc -3'
miRNA:   3'- gCGGGGcUCuGGUGGU---------GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 150996 0.67 0.835684
Target:  5'- gGCCCCGGuuCUACUACgACGCGGCcucGCa -3'
miRNA:   3'- gCGGGGCUcuGGUGGUG-UGUGUUG---UG- -5'
21374 3' -56.4 NC_004812.1 + 150913 0.73 0.515483
Target:  5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3'
miRNA:   3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 150792 0.68 0.792494
Target:  5'- gGCCCgcaGAGcCCGCCGCGCcccGCAGCcccGCa -3'
miRNA:   3'- gCGGGg--CUCuGGUGGUGUG---UGUUG---UG- -5'
21374 3' -56.4 NC_004812.1 + 150590 0.69 0.774158
Target:  5'- gGCUCCucgacGGGgcggcGCCGCCGCGCGcCGACGCg -3'
miRNA:   3'- gCGGGG-----CUC-----UGGUGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 150427 0.67 0.859465
Target:  5'- gCGCCCCG-GGCCuCCGCgACcCAACc- -3'
miRNA:   3'- -GCGGGGCuCUGGuGGUG-UGuGUUGug -5'
21374 3' -56.4 NC_004812.1 + 149753 0.68 0.783393
Target:  5'- cCGCCCCcggcGGGCCGCCuCGC-CGAcCGCg -3'
miRNA:   3'- -GCGGGGc---UCUGGUGGuGUGuGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 149713 1.1 0.00229
Target:  5'- gCGCCCCGAGACCACCACACACAACACg -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 149585 0.67 0.869947
Target:  5'- gCGuCCCCGGGGgaaaugugcgccgacCCGCCGCGgcgauguucgUGCGACGCg -3'
miRNA:   3'- -GC-GGGGCUCU---------------GGUGGUGU----------GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 149560 0.67 0.859465
Target:  5'- gGCCCUGGcGCgGuCCACAguCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUcUGgU-GGUGU--GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 149122 0.71 0.635781
Target:  5'- gCGCCCCGGucguccgcgcGGCCGCCgggGCGCGCGGucccCGCg -3'
miRNA:   3'- -GCGGGGCU----------CUGGUGG---UGUGUGUU----GUG- -5'
21374 3' -56.4 NC_004812.1 + 148977 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148890 0.66 0.894968
Target:  5'- uCGCCCggcgcgGAGACCcccGCCGCGgACucgGCGCg -3'
miRNA:   3'- -GCGGGg-----CUCUGG---UGGUGUgUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 148776 0.73 0.515483
Target:  5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3'
miRNA:   3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148725 0.69 0.774158
Target:  5'- gCGaCCCuCGAGAUCGCgACGCGacGCGCg -3'
miRNA:   3'- -GC-GGG-GCUCUGGUGgUGUGUguUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148678 0.66 0.90761
Target:  5'- gCGCCCCc---CgGCCGCGC-CGGCGCg -3'
miRNA:   3'- -GCGGGGcucuGgUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148623 0.68 0.783393
Target:  5'- gCGCCCCccuGACCGgcgcCCGCGCGCucucCGCg -3'
miRNA:   3'- -GCGGGGcu-CUGGU----GGUGUGUGuu--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.