miRNA display CGI


Results 61 - 80 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 148379 0.7 0.716427
Target:  5'- -cCCCCGGcccGGCCGCCGgGCGCGuccgACGCg -3'
miRNA:   3'- gcGGGGCU---CUGGUGGUgUGUGU----UGUG- -5'
21374 3' -56.4 NC_004812.1 + 148245 0.72 0.57895
Target:  5'- gGCCCCGGcGGCCGCCGacgcgguggggcggcCGCgcccgGCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUGGUGGU---------------GUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 147608 0.69 0.774158
Target:  5'- uGgCCCGGGGCCucaGCUugGCGCcucuGCGCg -3'
miRNA:   3'- gCgGGGCUCUGG---UGGugUGUGu---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 147514 0.74 0.466995
Target:  5'- gGCCCCGAGgcgccgucuucgcGCCGCCGC-CugGACGg -3'
miRNA:   3'- gCGGGGCUC-------------UGGUGGUGuGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 146242 0.68 0.827382
Target:  5'- -cCCCCGAGGCgUACUACACggagaGCGACGa -3'
miRNA:   3'- gcGGGGCUCUG-GUGGUGUG-----UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 146235 0.67 0.843
Target:  5'- gCGCCCCaGAGcauaaaaACCAgCCcgGgGCGCGACGCg -3'
miRNA:   3'- -GCGGGG-CUC-------UGGU-GG--UgUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 146041 0.7 0.686477
Target:  5'- uGCCCCcGGcACCGCUcgccgGCACGCAgaACGCg -3'
miRNA:   3'- gCGGGGcUC-UGGUGG-----UGUGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 145840 0.66 0.894968
Target:  5'- aCGCCCgGGGACUgucuuGCgGCGCG-AACGCc -3'
miRNA:   3'- -GCGGGgCUCUGG-----UGgUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 145698 0.79 0.270866
Target:  5'- uCGUCCCccGACCGCCACAC-CGGCGCu -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 145307 0.75 0.405391
Target:  5'- cCGCCCCGcGG-CGCCcCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCuCUgGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 144782 0.67 0.851732
Target:  5'- uGCuCCCGGGgacACCGuCCACAC-CGACGu -3'
miRNA:   3'- gCG-GGGCUC---UGGU-GGUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 144457 0.75 0.422724
Target:  5'- gGCCCCGAcGGCgCGCCGC-CcCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUG-GUGGUGuGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 144180 0.69 0.774158
Target:  5'- gGCCaUCGAGACgACCuggaaGCACGCgAGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGgUGG-----UGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143789 0.69 0.764798
Target:  5'- aGCCa-GAGACCACCGCGgccgucCAC-GCGCa -3'
miRNA:   3'- gCGGggCUCUGGUGGUGU------GUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143714 0.72 0.59512
Target:  5'- cCGCCCCGGGGgCACCGaGCGCcGCu- -3'
miRNA:   3'- -GCGGGGCUCUgGUGGUgUGUGuUGug -5'
21374 3' -56.4 NC_004812.1 + 143679 0.67 0.859465
Target:  5'- gGCCCCGGcGAUCGUCGCGCucgAGCGCu -3'
miRNA:   3'- gCGGGGCU-CUGGUGGUGUGug-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143334 0.66 0.881419
Target:  5'- cCGCgCCGAGGCCuccGCCGC-CcCGACGu -3'
miRNA:   3'- -GCGgGGCUCUGG---UGGUGuGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 143233 0.66 0.90761
Target:  5'- gCGCCUCGAgGugCACaGCAaGCAGCAg -3'
miRNA:   3'- -GCGGGGCU-CugGUGgUGUgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 143233 0.68 0.783393
Target:  5'- cCGaCCCCcggcgcggaaGGGACCGCCGCACccccgaccccCGGCGCg -3'
miRNA:   3'- -GC-GGGG----------CUCUGGUGGUGUGu---------GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143168 0.68 0.783393
Target:  5'- -cCCCCGAGACCACgGCGucccccgaaACGACGg -3'
miRNA:   3'- gcGGGGCUCUGGUGgUGUg--------UGUUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.