miRNA display CGI


Results 81 - 100 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 142655 0.69 0.763855
Target:  5'- gCGCCCCGuguuggucugcguGGGCuCGCC-CACGCAGacCGCg -3'
miRNA:   3'- -GCGGGGC-------------UCUG-GUGGuGUGUGUU--GUG- -5'
21374 3' -56.4 NC_004812.1 + 142480 0.75 0.449537
Target:  5'- gCGCCCUGAcgcggcuggcGGCguUCACGCACGGCGCg -3'
miRNA:   3'- -GCGGGGCU----------CUGguGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 142388 0.68 0.810257
Target:  5'- gCGCgCCGuGGCCGCCGgGgGCGGgGCc -3'
miRNA:   3'- -GCGgGGCuCUGGUGGUgUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 142303 0.72 0.574921
Target:  5'- gGCCCCG-GGCCGgCGCGgCGgGGCGCg -3'
miRNA:   3'- gCGGGGCuCUGGUgGUGU-GUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 142015 0.69 0.736053
Target:  5'- gGUUCCGGGACgugGCCGCGCugGAgACg -3'
miRNA:   3'- gCGGGGCUCUGg--UGGUGUGugUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 141487 0.66 0.888306
Target:  5'- uCGCCgUCGGGggcGCCGCCGUAC-CGGCGCa -3'
miRNA:   3'- -GCGG-GGCUC---UGGUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 141371 0.67 0.843803
Target:  5'- gGCCgCCGGGuCCGCCcUGCGCGAaGCa -3'
miRNA:   3'- gCGG-GGCUCuGGUGGuGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 140848 0.68 0.792494
Target:  5'- uCGCCCa-GGGCC-CgGCugACGGCGCg -3'
miRNA:   3'- -GCGGGgcUCUGGuGgUGugUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 140410 0.74 0.458681
Target:  5'- gCGgCCCGGGuCCGCCGCGCGCuGCugGCg -3'
miRNA:   3'- -GCgGGGCUCuGGUGGUGUGUGuUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 140102 0.73 0.554884
Target:  5'- gCGCCCau-GGCgGgCGCGCGCAGCACg -3'
miRNA:   3'- -GCGGGgcuCUGgUgGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 139307 0.67 0.851732
Target:  5'- cCGCCaaCGGGACgGCCGgCGCggagaGCGACGCg -3'
miRNA:   3'- -GCGGg-GCUCUGgUGGU-GUG-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 139123 0.68 0.801451
Target:  5'- aCG-UCCGGGAgCGCCAC-CGCGGCAUc -3'
miRNA:   3'- -GCgGGGCUCUgGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 138981 0.7 0.716427
Target:  5'- gCGCgUCCGAcGACCACCAgGaCACGAgGCc -3'
miRNA:   3'- -GCG-GGGCU-CUGGUGGUgU-GUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 138845 0.69 0.745736
Target:  5'- uCGCCCCcacGcCCGCC-CACACcGCGCa -3'
miRNA:   3'- -GCGGGGcu-CuGGUGGuGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 138704 0.7 0.706503
Target:  5'- uCGCgCCCG-GACgACCGCGgCGCGGCGg -3'
miRNA:   3'- -GCG-GGGCuCUGgUGGUGU-GUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 138340 0.67 0.851732
Target:  5'- gGCCCUGcGG--AUCGCGCACGACGCc -3'
miRNA:   3'- gCGGGGCuCUggUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 138258 0.69 0.774158
Target:  5'- aCGCCgCGGcGGCCGCgguCGCGCGCcGCGCc -3'
miRNA:   3'- -GCGGgGCU-CUGGUG---GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 138173 0.71 0.656125
Target:  5'- gCGCCaCCGGacgcGGCCcccGCCGCGCGCGACcCa -3'
miRNA:   3'- -GCGG-GGCU----CUGG---UGGUGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 138134 0.66 0.894968
Target:  5'- cCGCCCCucguccugGAGGgCACgUACACGC-ACGCc -3'
miRNA:   3'- -GCGGGG--------CUCUgGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 137872 0.67 0.874314
Target:  5'- gCGCCgCGAGuaccCCGCCGuCGCGagGACGCu -3'
miRNA:   3'- -GCGGgGCUCu---GGUGGU-GUGUg-UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.