miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 137835 0.69 0.736053
Target:  5'- gGCCCCGGGAggucCUGgCGCugGCGACGg -3'
miRNA:   3'- gCGGGGCUCU----GGUgGUGugUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 137772 0.72 0.585004
Target:  5'- cCGCCaCCGGGcggcgcgcaACCGCCGCcCGCcGCACa -3'
miRNA:   3'- -GCGG-GGCUC---------UGGUGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 137755 0.71 0.645958
Target:  5'- -cCCCCGGGACCcgcuggGCCgagGCGCGCGACGg -3'
miRNA:   3'- gcGGGGCUCUGG------UGG---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 137606 0.67 0.835684
Target:  5'- gGCCUggugaucuuCGAGGCgGCCguGCACACGGCGu -3'
miRNA:   3'- gCGGG---------GCUCUGgUGG--UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 137579 0.69 0.774158
Target:  5'- gGCCgaGAGGCUGCCGCccGCGCuGCGCc -3'
miRNA:   3'- gCGGggCUCUGGUGGUG--UGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 137323 0.68 0.827382
Target:  5'- uCGCCCCcucGA-CACCGCGCAgGugACg -3'
miRNA:   3'- -GCGGGGcu-CUgGUGGUGUGUgUugUG- -5'
21374 3' -56.4 NC_004812.1 + 137230 0.66 0.901404
Target:  5'- gGCCCUGcuGGACguCCGCGCGguGgGCg -3'
miRNA:   3'- gCGGGGC--UCUGguGGUGUGUguUgUG- -5'
21374 3' -56.4 NC_004812.1 + 137186 0.68 0.810257
Target:  5'- gGUCCUGcGGCCgcgcgGCCACGCGCAggccgugaccGCGCg -3'
miRNA:   3'- gCGGGGCuCUGG-----UGGUGUGUGU----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 136987 0.68 0.783393
Target:  5'- uCGCCgCGAGACCGg-ACGCGCGGCugGCg -3'
miRNA:   3'- -GCGGgGCUCUGGUggUGUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 136917 0.7 0.676392
Target:  5'- gCGCCgCGc-GCCGCCGCGCugGACGu -3'
miRNA:   3'- -GCGGgGCucUGGUGGUGUGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 136837 0.67 0.833212
Target:  5'- uCGCCCCGgcgcgcgucgccugGGACCcCCGCACcggGCugguGGCGCg -3'
miRNA:   3'- -GCGGGGC--------------UCUGGuGGUGUG---UG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136718 0.67 0.835684
Target:  5'- gGCCCCcAGACCcacgaccccccCCGCGCccACGACGCc -3'
miRNA:   3'- gCGGGGcUCUGGu----------GGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136524 0.69 0.755321
Target:  5'- nCGCUccuCCGAGGCguCCGCuggcuggcgcGCGCGACGCg -3'
miRNA:   3'- -GCGG---GGCUCUGguGGUG----------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136500 0.74 0.467924
Target:  5'- -cCCCCGcGcGCCGCUGCGCGCGGCGCg -3'
miRNA:   3'- gcGGGGCuC-UGGUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136304 0.75 0.446813
Target:  5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3'
miRNA:   3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136288 0.67 0.859465
Target:  5'- gCGCCCgCGuGggggcgguGCCugCGCGCGCGcuGCGCc -3'
miRNA:   3'- -GCGGG-GCuC--------UGGugGUGUGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 136271 0.66 0.881419
Target:  5'- gGgCCCGuGcCCGCCcuGCACuCGACGCg -3'
miRNA:   3'- gCgGGGCuCuGGUGG--UGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136025 0.73 0.514512
Target:  5'- cCGCCCgCGGGGCCaucggcgaggcggACCACGCGCuGAUGCu -3'
miRNA:   3'- -GCGGG-GCUCUGG-------------UGGUGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 135995 0.69 0.774158
Target:  5'- cCGcCCCCGAGACgCAgUCGCAgGC-GCGCg -3'
miRNA:   3'- -GC-GGGGCUCUG-GU-GGUGUgUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 135866 0.68 0.818904
Target:  5'- cCGCCCCGA--CCACC-CACAggUggUACa -3'
miRNA:   3'- -GCGGGGCUcuGGUGGuGUGU--GuuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.