miRNA display CGI

Results 121 - 140 of 796 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21374	3'	-56.4	NC_004812.1	+	135803	0.69	0.755321
	Target:  5'- uGUUCCGGcugugcGGCgGCCugGCGCAGCGCc -3' miRNA:   3'- gCGGGGCU------CUGgUGGugUGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	135534	0.69	0.761966
	Target:  5'- cCGCCUCGgccgccgcggacucGGACCccgGCCACAgGCGggGCACg -3' miRNA:   3'- -GCGGGGC--------------UCUGG---UGGUGUgUGU--UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	135461	0.75	0.405391
	Target:  5'- gGCaCgCCGAGACCcCCGC-CGCGGCACg -3' miRNA:   3'- gCG-G-GGCUCUGGuGGUGuGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	135392	0.76	0.380247
	Target:  5'- uCGCCgCGAGACUucuGCCGCuuucuGCGCGGCGCg -3' miRNA:   3'- -GCGGgGCUCUGG---UGGUG-----UGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	134839	0.67	0.874314
	Target:  5'- gCGCCCCGGgggguggcGACCgACgGCGCGuCGGCGg -3' miRNA:   3'- -GCGGGGCU--------CUGG-UGgUGUGU-GUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	134499	0.67	0.873591
	Target:  5'- uGCCCCcGGAUCAUCGCcauggacgccaccGC-CAACGCg -3' miRNA:   3'- gCGGGGcUCUGGUGGUG-------------UGuGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	133846	0.7	0.720377
	Target:  5'- aCGCCCCcaccuGGACgcaccagguccaccaCGCCGCGCGCGAgACg -3' miRNA:   3'- -GCGGGGc----UCUG---------------GUGGUGUGUGUUgUG- -5'
21374	3'	-56.4	NC_004812.1	+	133815	0.69	0.774158
	Target:  5'- aGCCCCacGAGACagaGCgCGgACACGACAa -3' miRNA:   3'- gCGGGG--CUCUGg--UG-GUgUGUGUUGUg -5'
21374	3'	-56.4	NC_004812.1	+	133673	0.68	0.792494
	Target:  5'- uGCCCaCGAGACUcugggcguCCAgGCGCGgggGCGCg -3' miRNA:   3'- gCGGG-GCUCUGGu-------GGUgUGUGU---UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	133667	0.67	0.857166
	Target:  5'- uCGCCCCGAgcgggcgaggGACuCACCGCGacccCACGcuccgcccccgcagGCACg -3' miRNA:   3'- -GCGGGGCU----------CUG-GUGGUGU----GUGU--------------UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	133180	0.7	0.716427
	Target:  5'- gCGCCCCGA--CCACCGucguCGC-CGACGCc -3' miRNA:   3'- -GCGGGGCUcuGGUGGU----GUGuGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	133132	0.7	0.686477
	Target:  5'- aGCCCCucGACCACCGCcaGCAggaggacgacgaGCGCg -3' miRNA:   3'- gCGGGGcuCUGGUGGUGugUGU------------UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	133117	0.68	0.819759
	Target:  5'- cCGCgCCCG-GcCCGCCGCACACccuccuucccucgccGCGCg -3' miRNA:   3'- -GCG-GGGCuCuGGUGGUGUGUGu--------------UGUG- -5'
21374	3'	-56.4	NC_004812.1	+	132988	0.7	0.72628
	Target:  5'- gCGCCCCGGcGGCCGC-GCGgACGAC-Cg -3' miRNA:   3'- -GCGGGGCU-CUGGUGgUGUgUGUUGuG- -5'
21374	3'	-56.4	NC_004812.1	+	132793	0.86	0.099158
	Target:  5'- gGCCCCGGGucGCCGCCcCGCGCGGCGCg -3' miRNA:   3'- gCGGGGCUC--UGGUGGuGUGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	132094	0.66	0.901405
	Target:  5'- aGCCCCGA--CCGCaGCcccCGCGGCGCg -3' miRNA:   3'- gCGGGGCUcuGGUGgUGu--GUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	131828	0.66	0.881419
	Target:  5'- uCGCCCUGAucAUCACCccgguGCGCAuCGACGCc -3' miRNA:   3'- -GCGGGGCUc-UGGUGG-----UGUGU-GUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	131742	0.72	0.585004
	Target:  5'- gCGCCUCGAGgacgcccccgcaGCCgcGCCGCcCGCGGCGCg -3' miRNA:   3'- -GCGGGGCUC------------UGG--UGGUGuGUGUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	131536	0.72	0.562876
	Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3' miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374	3'	-56.4	NC_004812.1	+	131503	0.66	0.881419
	Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3' miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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