miRNA display CGI


Results 41 - 60 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 69426 0.81 0.193
Target:  5'- gGCCCgGAGgacGCCgGCCGCACGCGGCGCa -3'
miRNA:   3'- gCGGGgCUC---UGG-UGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154125 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100991 0.82 0.170326
Target:  5'- gCGCCCCagaaAGGCCGCCuCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGc---UCUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 118076 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55798 0.87 0.08692
Target:  5'- cCGcCCCCGAGACgCGCCAgCACGCGGCGCa -3'
miRNA:   3'- -GC-GGGGCUCUG-GUGGU-GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 67010 0.78 0.283856
Target:  5'- gGCCUCGGGGCCgGCCGCcCGCAGCAg -3'
miRNA:   3'- gCGGGGCUCUGG-UGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 107863 0.78 0.283856
Target:  5'- cCGCCuCCGAGggcggaGCCGCCACGCGCAcCAUc -3'
miRNA:   3'- -GCGG-GGCUC------UGGUGGUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 68275 0.76 0.396894
Target:  5'- gGCCCCgGAGGCCGgCACGC-CAAuCACg -3'
miRNA:   3'- gCGGGG-CUCUGGUgGUGUGuGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 23069 0.76 0.396894
Target:  5'- gCGgCCCGcaugguGGCCACC-CACGCGACGCu -3'
miRNA:   3'- -GCgGGGCu-----CUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 30595 0.76 0.391851
Target:  5'- gCGCCCgCcgggggucgggcggcGGGACCGCCACcugACACAGCGCc -3'
miRNA:   3'- -GCGGG-G---------------CUCUGGUGGUG---UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2633 0.76 0.372101
Target:  5'- cCGCCCCgcGAGACCugCGCcgucuGCACGgaGCGCa -3'
miRNA:   3'- -GCGGGG--CUCUGGugGUG-----UGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 151375 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 19820 0.76 0.372101
Target:  5'- gCGCUCCaGGGCCACCAgCGCGC-ACGCg -3'
miRNA:   3'- -GCGGGGcUCUGGUGGU-GUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3900 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 14464 0.76 0.356169
Target:  5'- uCGCCCCGG--UCACCACGCAgucCAGCACc -3'
miRNA:   3'- -GCGGGGCUcuGGUGGUGUGU---GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100419 0.77 0.325767
Target:  5'- gCGCCgCGAGGCCGCC-CGCACGucCGCc -3'
miRNA:   3'- -GCGGgGCUCUGGUGGuGUGUGUu-GUG- -5'
21374 3' -56.4 NC_004812.1 + 51434 0.77 0.318474
Target:  5'- cCGCCCCGccACCAgCCGCACGCGACc- -3'
miRNA:   3'- -GCGGGGCucUGGU-GGUGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 116140 0.78 0.304258
Target:  5'- gGCCCCGAGGgCggGCCACAgggcCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUCUgG--UGGUGU----GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 33603 0.78 0.297334
Target:  5'- cCGCCCCucGACCACCACGaACGGCGg -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 107935 0.78 0.296649
Target:  5'- gCGCCCCGAGgaggccgGCCAUCGCGCgGCGAgGCg -3'
miRNA:   3'- -GCGGGGCUC-------UGGUGGUGUG-UGUUgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.