miRNA display CGI


Results 81 - 100 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 136304 0.75 0.446813
Target:  5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3'
miRNA:   3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18320 0.75 0.448628
Target:  5'- aGCCcgCCGcGACCACCGCccgcaggGCGCGGCGCg -3'
miRNA:   3'- gCGG--GGCuCUGGUGGUG-------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 56906 0.75 0.448628
Target:  5'- aGCCCUGGGcgcaggcGCCGCCGCACG--GCGCg -3'
miRNA:   3'- gCGGGGCUC-------UGGUGGUGUGUguUGUG- -5'
21374 3' -56.4 NC_004812.1 + 37744 0.75 0.449537
Target:  5'- gGCCCCGGGAgcgugaaguCCACCACcagcuGCGCgAGCGCc -3'
miRNA:   3'- gCGGGGCUCU---------GGUGGUG-----UGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 127732 0.75 0.449537
Target:  5'- gCGgCCCGcGGCCAgCgCACGCGCGGCGCg -3'
miRNA:   3'- -GCgGGGCuCUGGU-G-GUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 32693 0.74 0.458681
Target:  5'- cCGgCCCGGGACCGCgGgCGC-CAGCACc -3'
miRNA:   3'- -GCgGGGCUCUGGUGgU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 147514 0.74 0.466995
Target:  5'- gGCCCCGAGgcgccgucuucgcGCCGCCGC-CugGACGg -3'
miRNA:   3'- gCGGGGCUC-------------UGGUGGUGuGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 3334 0.75 0.431555
Target:  5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3'
miRNA:   3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 128223 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 144457 0.75 0.422724
Target:  5'- gGCCCCGAcGGCgCGCCGC-CcCAGCGCg -3'
miRNA:   3'- gCGGGGCU-CUG-GUGGUGuGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 23069 0.76 0.396894
Target:  5'- gCGgCCCGcaugguGGCCACC-CACGCGACGCu -3'
miRNA:   3'- -GCgGGGCu-----CUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 68275 0.76 0.396894
Target:  5'- gGCCCCgGAGGCCGgCACGC-CAAuCACg -3'
miRNA:   3'- gCGGGG-CUCUGGUgGUGUGuGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 85094 0.76 0.396894
Target:  5'- gGCCgCCGAGGCCGuCCGCACccACGugACc -3'
miRNA:   3'- gCGG-GGCUCUGGU-GGUGUG--UGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 135461 0.75 0.405391
Target:  5'- gGCaCgCCGAGACCcCCGC-CGCGGCACg -3'
miRNA:   3'- gCG-G-GGCUCUGGuGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 145307 0.75 0.405391
Target:  5'- cCGCCCCGcGG-CGCCcCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCuCUgGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153113 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 56541 0.75 0.414001
Target:  5'- aGCCCCGAccCCACCGCGC-CAAC-Ca -3'
miRNA:   3'- gCGGGGCUcuGGUGGUGUGuGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 103499 0.75 0.414001
Target:  5'- cCGCUCCGcGACgGCCGCGCGgAGCAUc -3'
miRNA:   3'- -GCGGGGCuCUGgUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153526 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 29683 0.74 0.467924
Target:  5'- aCGCCgCGAGAaaCCGCCagggACGCACGACGa -3'
miRNA:   3'- -GCGGgGCUCU--GGUGG----UGUGUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.