miRNA display CGI


Results 121 - 140 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 2583 0.73 0.554884
Target:  5'- cCGCCuCCGAcGCCGCCGcCGCcgACGGCACc -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGU-GUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 131536 0.72 0.562876
Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3'
miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2829 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 21600 0.74 0.477261
Target:  5'- cCGCCCCaGGGACUGgUACAC-CGACACc -3'
miRNA:   3'- -GCGGGG-CUCUGGUgGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153943 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 128223 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3334 0.75 0.431555
Target:  5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3'
miRNA:   3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5307 0.75 0.431555
Target:  5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 62272 0.75 0.431555
Target:  5'- cCGCCCCGcgcAGGCCgcGCCGCACACcuacuGCAg -3'
miRNA:   3'- -GCGGGGC---UCUGG--UGGUGUGUGu----UGUg -5'
21374 3' -56.4 NC_004812.1 + 19387 0.75 0.440494
Target:  5'- aGCCCCGGGgcACCAggaCGCGCGCGGuCACg -3'
miRNA:   3'- gCGGGGCUC--UGGUg--GUGUGUGUU-GUG- -5'
21374 3' -56.4 NC_004812.1 + 136304 0.75 0.446813
Target:  5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3'
miRNA:   3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18320 0.75 0.448628
Target:  5'- aGCCcgCCGcGACCACCGCccgcaggGCGCGGCGCg -3'
miRNA:   3'- gCGG--GGCuCUGGUGGUG-------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 152811 0.72 0.564879
Target:  5'- gGCgCCGAGGCCGCCGuCGcCGCcguGCGCg -3'
miRNA:   3'- gCGgGGCUCUGGUGGU-GU-GUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 56906 0.75 0.448628
Target:  5'- aGCCCUGGGcgcaggcGCCGCCGCACG--GCGCg -3'
miRNA:   3'- gCGGGGCUC-------UGGUGGUGUGUguUGUG- -5'
21374 3' -56.4 NC_004812.1 + 37744 0.75 0.449537
Target:  5'- gGCCCCGGGAgcgugaaguCCACCACcagcuGCGCgAGCGCc -3'
miRNA:   3'- gCGGGGCUCU---------GGUGGUG-----UGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 127732 0.75 0.449537
Target:  5'- gCGgCCCGcGGCCAgCgCACGCGCGGCGCg -3'
miRNA:   3'- -GCgGGGCuCUGGU-G-GUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 32693 0.74 0.458681
Target:  5'- cCGgCCCGGGACCGCgGgCGC-CAGCACc -3'
miRNA:   3'- -GCgGGGCUCUGGUGgU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 147514 0.74 0.466995
Target:  5'- gGCCCCGAGgcgccgucuucgcGCCGCCGC-CugGACGg -3'
miRNA:   3'- gCGGGGCUC-------------UGGUGGUGuGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 29683 0.74 0.467924
Target:  5'- aCGCCgCGAGAaaCCGCCagggACGCACGACGa -3'
miRNA:   3'- -GCGGgGCUCU--GGUGG----UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 136500 0.74 0.467924
Target:  5'- -cCCCCGcGcGCCGCUGCGCGCGGCGCg -3'
miRNA:   3'- gcGGGGCuC-UGGUGGUGUGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.