Results 141 - 160 of 796 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21374 | 3' | -56.4 | NC_004812.1 | + | 117875 | 0.73 | 0.515483 |
Target: 5'- cCGCCCCGAGAgaGCCGC-CGaGACGCc -3' miRNA: 3'- -GCGGGGCUCUggUGGUGuGUgUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 70524 | 0.73 | 0.515483 |
Target: 5'- aCGCCUCGAucagGACCGCCAgCGCGCuGCGa -3' miRNA: 3'- -GCGGGGCU----CUGGUGGU-GUGUGuUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 147514 | 0.74 | 0.466995 |
Target: 5'- gGCCCCGAGgcgccgucuucgcGCCGCCGC-CugGACGg -3' miRNA: 3'- gCGGGGCUC-------------UGGUGGUGuGugUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 32693 | 0.74 | 0.458681 |
Target: 5'- cCGgCCCGGGACCGCgGgCGC-CAGCACc -3' miRNA: 3'- -GCgGGGCUCUGGUGgU-GUGuGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 127732 | 0.75 | 0.449537 |
Target: 5'- gCGgCCCGcGGCCAgCgCACGCGCGGCGCg -3' miRNA: 3'- -GCgGGGCuCUGGU-G-GUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 37744 | 0.75 | 0.449537 |
Target: 5'- gGCCCCGGGAgcgugaaguCCACCACcagcuGCGCgAGCGCc -3' miRNA: 3'- gCGGGGCUCU---------GGUGGUG-----UGUG-UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 56906 | 0.75 | 0.448628 |
Target: 5'- aGCCCUGGGcgcaggcGCCGCCGCACG--GCGCg -3' miRNA: 3'- gCGGGGCUC-------UGGUGGUGUGUguUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 18320 | 0.75 | 0.448628 |
Target: 5'- aGCCcgCCGcGACCACCGCccgcaggGCGCGGCGCg -3' miRNA: 3'- gCGG--GGCuCUGGUGGUG-------UGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 136304 | 0.75 | 0.446813 |
Target: 5'- gGCCCCGggcgcuggacgucaGGACCGCuCGCGCACucgaggggcGACACg -3' miRNA: 3'- gCGGGGC--------------UCUGGUG-GUGUGUG---------UUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 19387 | 0.75 | 0.440494 |
Target: 5'- aGCCCCGGGgcACCAggaCGCGCGCGGuCACg -3' miRNA: 3'- gCGGGGCUC--UGGUg--GUGUGUGUU-GUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 29683 | 0.74 | 0.467924 |
Target: 5'- aCGCCgCGAGAaaCCGCCagggACGCACGACGa -3' miRNA: 3'- -GCGGgGCUCU--GGUGG----UGUGUGUUGUg -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 136500 | 0.74 | 0.467924 |
Target: 5'- -cCCCCGcGcGCCGCUGCGCGCGGCGCg -3' miRNA: 3'- gcGGGGCuC-UGGUGGUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 150913 | 0.73 | 0.515483 |
Target: 5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3' miRNA: 3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 56288 | 0.73 | 0.514512 |
Target: 5'- gGCCCgcuCGAGGgccugguCCAgCACGCGCAGCGCg -3' miRNA: 3'- gCGGG---GCUCU-------GGUgGUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 153235 | 0.73 | 0.505805 |
Target: 5'- cCGCCCuCGAGGCCuACUGCGCcCcGCGCg -3' miRNA: 3'- -GCGGG-GCUCUGG-UGGUGUGuGuUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 73386 | 0.73 | 0.505805 |
Target: 5'- gCGCCCgGGGGCCACCGaggcccccgaGCGCGGC-Cg -3' miRNA: 3'- -GCGGGgCUCUGGUGGUg---------UGUGUUGuG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 126040 | 0.74 | 0.48669 |
Target: 5'- cCGCCCCGGGAgCCggaaggcgGCgACGCGCcGCGCg -3' miRNA: 3'- -GCGGGGCUCU-GG--------UGgUGUGUGuUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 2829 | 0.74 | 0.48669 |
Target: 5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3' miRNA: 3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 21600 | 0.74 | 0.477261 |
Target: 5'- cCGCCCCaGGGACUGgUACAC-CGACACc -3' miRNA: 3'- -GCGGGG-CUCUGGUgGUGUGuGUUGUG- -5' |
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21374 | 3' | -56.4 | NC_004812.1 | + | 153943 | 0.74 | 0.477261 |
Target: 5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3' miRNA: 3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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