miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 61114 0.76 0.38768
Target:  5'- gCGCCCCGcGGCgCGCCggcgcccGCGCACAACAa -3'
miRNA:   3'- -GCGGGGCuCUG-GUGG-------UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 54696 0.77 0.333183
Target:  5'- gGCCCCGAGGCCcgaccGCCGCGCcucGgGGCGCc -3'
miRNA:   3'- gCGGGGCUCUGG-----UGGUGUG---UgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 58185 0.84 0.128656
Target:  5'- cCGCCCCGcGGCCGCCGCACcgaGACGCu -3'
miRNA:   3'- -GCGGGGCuCUGGUGGUGUGug-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 135392 0.76 0.380247
Target:  5'- uCGCCgCGAGACUucuGCCGCuuucuGCGCGGCGCg -3'
miRNA:   3'- -GCGGgGCUCUGG---UGGUG-----UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 132793 0.86 0.099158
Target:  5'- gGCCCCGGGucGCCGCCcCGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUC--UGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18650 0.74 0.48669
Target:  5'- cCGCCCCGAcgaggGGCCGCCGCGC-CGGgAa -3'
miRNA:   3'- -GCGGGGCU-----CUGGUGGUGUGuGUUgUg -5'
21374 3' -56.4 NC_004812.1 + 12441 0.83 0.14259
Target:  5'- uCGUCUCGAuGGCCGCCGCGCACAcACACg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 33730 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 84632 0.74 0.477261
Target:  5'- aGCCCCGGGGcgcgugagccucCCGCgGCGCGCGuCGCg -3'
miRNA:   3'- gCGGGGCUCU------------GGUGgUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 142480 0.75 0.449537
Target:  5'- gCGCCCUGAcgcggcuggcGGCguUCACGCACGGCGCg -3'
miRNA:   3'- -GCGGGGCU----------CUGguGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 111047 0.75 0.431555
Target:  5'- gGCCgacucgugguaCCGGGACCACC-CGCGCAuGCGCg -3'
miRNA:   3'- gCGG-----------GGCUCUGGUGGuGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 117820 0.75 0.422724
Target:  5'- gCGCCCCGcAGACCACgCGCGUGC-GCGCg -3'
miRNA:   3'- -GCGGGGC-UCUGGUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27605 0.75 0.408821
Target:  5'- gGCCCCGGGcccgcgcccgcggcCCGCCGCGCugACGGCGCg -3'
miRNA:   3'- gCGGGGCUCu-------------GGUGGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 121864 0.76 0.372101
Target:  5'- gGCCCCGGGGCCGCCccaGgACGGCGa -3'
miRNA:   3'- gCGGGGCUCUGGUGGug-UgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 34801 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100331 0.76 0.356169
Target:  5'- gGCCCuCGAGcggGCCGCCGCGgGCGAgGCg -3'
miRNA:   3'- gCGGG-GCUC---UGGUGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 52593 0.77 0.340723
Target:  5'- gGCCCCGAGGCCguacGCCACGgGCcgccucagccaGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGG----UGGUGUgUG-----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 119155 0.78 0.290534
Target:  5'- cCGCCCCGcGGACUggACCACGCACcACAa -3'
miRNA:   3'- -GCGGGGC-UCUGG--UGGUGUGUGuUGUg -5'
21374 3' -56.4 NC_004812.1 + 120816 0.79 0.252283
Target:  5'- gGCCCCGAGACgCACUuCACGCAGUACc -3'
miRNA:   3'- gCGGGGCUCUG-GUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28617 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.