miRNA display CGI


Results 81 - 100 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 105313 0.74 0.458681
Target:  5'- uGCCCguaCGGGGCCGCCcgcGCGCGCAuguGCGCc -3'
miRNA:   3'- gCGGG---GCUCUGGUGG---UGUGUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 28435 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 89613 0.74 0.48669
Target:  5'- gGCCCCGAGGCCAUCuucaaGCACAu--- -3'
miRNA:   3'- gCGGGGCUCUGGUGGug---UGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 55824 0.74 0.496206
Target:  5'- gGgCCCGAGGCCgGCCAcCGCACGAUcgGCg -3'
miRNA:   3'- gCgGGGCUCUGG-UGGU-GUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 25405 0.73 0.515483
Target:  5'- gCGCucgCCgGAGACCGCCGCGCgGCGuucGCGCa -3'
miRNA:   3'- -GCG---GGgCUCUGGUGGUGUG-UGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 102095 0.73 0.535056
Target:  5'- gCGUCCguCGAGGCCGgC-CACGCGACGCu -3'
miRNA:   3'- -GCGGG--GCUCUGGUgGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55438 0.73 0.535056
Target:  5'- cCGgaCCCGAGGCCGCCGCcuucCGCAGCu- -3'
miRNA:   3'- -GCg-GGGCUCUGGUGGUGu---GUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 126240 0.76 0.372101
Target:  5'- aGCCCCGAcccGGCCGCCGagcggcucgACGCGACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGUGGUg--------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25867 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 84414 0.76 0.356169
Target:  5'- aCGCCCCGcgacgacccgGGGCCcccgGCCGCACcCAGCACc -3'
miRNA:   3'- -GCGGGGC----------UCUGG----UGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 85356 0.72 0.563878
Target:  5'- gCGCCCCGAGccggcccACCGCCGCcgucccCGCcGCGCc -3'
miRNA:   3'- -GCGGGGCUC-------UGGUGGUGu-----GUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 929 0.72 0.574921
Target:  5'- gCGCgCCGAGcCCGCCGCGCGCu---- -3'
miRNA:   3'- -GCGgGGCUCuGGUGGUGUGUGuugug -5'
21374 3' -56.4 NC_004812.1 + 20318 0.72 0.583994
Target:  5'- aGCgCCCGGGGCCGCgACGCgucgaguGCAGgGCg -3'
miRNA:   3'- gCG-GGGCUCUGGUGgUGUG-------UGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 156185 0.72 0.585004
Target:  5'- gCGCgCgCGAGAgCGCCGCGCGCGgaaggccuGCGCg -3'
miRNA:   3'- -GCGgG-GCUCUgGUGGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 82095 0.71 0.614409
Target:  5'- aCGCCCUG-GGCCGCCuGCugGCcgaguucGACGCg -3'
miRNA:   3'- -GCGGGGCuCUGGUGG-UGugUG-------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148977 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9108 0.81 0.202787
Target:  5'- gCGCCUCGGGGCCACCGgACccccGCGGCGCc -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUgUG----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 110144 0.78 0.290534
Target:  5'- -uCCCUGAGGCCGuCCACGCAgAGCGCc -3'
miRNA:   3'- gcGGGGCUCUGGU-GGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 46896 0.77 0.318474
Target:  5'- gCGCCCCGGGgcgggcgcggcgGCCGCCGC-CGCGGCGg -3'
miRNA:   3'- -GCGGGGCUC------------UGGUGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 10226 0.76 0.356169
Target:  5'- aGCCCCcAGGCCGCCugAgAuCAGCGCg -3'
miRNA:   3'- gCGGGGcUCUGGUGGugUgU-GUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.