miRNA display CGI


Results 101 - 120 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 45226 0.72 0.585004
Target:  5'- uGCCcgCCGAuGACguCACCGCgACACAGCGCg -3'
miRNA:   3'- gCGG--GGCU-CUG--GUGGUG-UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 10653 0.71 0.615426
Target:  5'- aGCCCgaGGGugCcCCGCACcCAGCGCa -3'
miRNA:   3'- gCGGGg-CUCugGuGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 51087 0.71 0.625601
Target:  5'- aCGCCCgGugauGACgGCCGCACACc-CACu -3'
miRNA:   3'- -GCGGGgCu---CUGgUGGUGUGUGuuGUG- -5'
21374 3' -56.4 NC_004812.1 + 127467 0.71 0.635781
Target:  5'- gCGUCCCGugGGACCGCCcguGCGuCGCGACGu -3'
miRNA:   3'- -GCGGGGC--UCUGGUGG---UGU-GUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 109707 0.71 0.635781
Target:  5'- cCGCCgCCGcgcuGGCgGCCGCGCugGGCAg -3'
miRNA:   3'- -GCGG-GGCu---CUGgUGGUGUGugUUGUg -5'
21374 3' -56.4 NC_004812.1 + 55824 0.74 0.496206
Target:  5'- gGgCCCGAGGCCgGCCAcCGCACGAUcgGCg -3'
miRNA:   3'- gCgGGGCUCUGG-UGGU-GUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 89613 0.74 0.48669
Target:  5'- gGCCCCGAGGCCAUCuucaaGCACAu--- -3'
miRNA:   3'- gCGGGGCUCUGGUGGug---UGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 148977 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9108 0.81 0.202787
Target:  5'- gCGCCUCGGGGCCACCGgACccccGCGGCGCc -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUgUG----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 110144 0.78 0.290534
Target:  5'- -uCCCUGAGGCCGuCCACGCAgAGCGCc -3'
miRNA:   3'- gcGGGGCUCUGGU-GGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 46896 0.77 0.318474
Target:  5'- gCGCCCCGGGgcgggcgcggcgGCCGCCGC-CGCGGCGg -3'
miRNA:   3'- -GCGGGGCUC------------UGGUGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 10226 0.76 0.356169
Target:  5'- aGCCCCcAGGCCGCCugAgAuCAGCGCg -3'
miRNA:   3'- gCGGGGcUCUGGUGGugUgU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 84414 0.76 0.356169
Target:  5'- aCGCCCCGcgacgacccgGGGCCcccgGCCGCACcCAGCACc -3'
miRNA:   3'- -GCGGGGC----------UCUGG----UGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25867 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126240 0.76 0.372101
Target:  5'- aGCCCCGAcccGGCCGCCGagcggcucgACGCGACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGUGGUg--------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 81380 0.75 0.414001
Target:  5'- gCGCgCCGAGGCCACCgAC-CGCGuCACg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGuGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 2715 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 128727 0.75 0.440494
Target:  5'- uCGCCCCGGGcCCACCAC-C-CAGCu- -3'
miRNA:   3'- -GCGGGGCUCuGGUGGUGuGuGUUGug -5'
21374 3' -56.4 NC_004812.1 + 105313 0.74 0.458681
Target:  5'- uGCCCguaCGGGGCCGCCcgcGCGCGCAuguGCGCc -3'
miRNA:   3'- gCGGG---GCUCUGGUGG---UGUGUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 28435 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.