miRNA display CGI


Results 121 - 140 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 46565 0.76 0.356169
Target:  5'- aGCCCCGGG-UCGCCGCGCACcGCcCg -3'
miRNA:   3'- gCGGGGCUCuGGUGGUGUGUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 60098 0.76 0.356954
Target:  5'- aGCCCCGGGugcccggggcaggguCCGCCGCugGCGGCGg -3'
miRNA:   3'- gCGGGGCUCu--------------GGUGGUGugUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 17052 0.71 0.635781
Target:  5'- gCGCCUCGGucccGGCCGCCGCGgAC-GCGCc -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUgUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 76692 0.71 0.615426
Target:  5'- cCGCCCCG-GGCCugCugGagaCGCAAUGCc -3'
miRNA:   3'- -GCGGGGCuCUGGugGugU---GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 106509 0.72 0.605263
Target:  5'- gGcCCCCGGGGgucguCCACCACgGC-CAGCACg -3'
miRNA:   3'- gC-GGGGCUCU-----GGUGGUG-UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28017 0.75 0.421846
Target:  5'- cCGCCCCGcccgccuGGACCGaCGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGC-------UCUGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 36208 0.75 0.431555
Target:  5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 42529 0.75 0.449537
Target:  5'- cCGCCCCGGca-CACCACGCACAA-ACg -3'
miRNA:   3'- -GCGGGGCUcugGUGGUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 84632 0.74 0.477261
Target:  5'- aGCCCCGGGGcgcgugagccucCCGCgGCGCGCGuCGCg -3'
miRNA:   3'- gCGGGGCUCU------------GGUGgUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 33730 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 44655 0.74 0.49525
Target:  5'- cCGaCCCCGGcggggccGACuCGCCGCGCGCGACGa -3'
miRNA:   3'- -GC-GGGGCU-------CUG-GUGGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 136025 0.73 0.514512
Target:  5'- cCGCCCgCGGGGCCaucggcgaggcggACCACGCGCuGAUGCu -3'
miRNA:   3'- -GCGGG-GCUCUGG-------------UGGUGUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 88383 0.73 0.519375
Target:  5'- gGCCCCGGcccccgcgcacccccGGCCgGCCGCGCGCGGC-Cg -3'
miRNA:   3'- gCGGGGCU---------------CUGG-UGGUGUGUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 102095 0.73 0.535056
Target:  5'- gCGUCCguCGAGGCCGgC-CACGCGACGCu -3'
miRNA:   3'- -GCGGG--GCUCUGGUgGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 107199 0.73 0.544941
Target:  5'- gCGgCCCGGGGCCACgGCGCGgGcCGCc -3'
miRNA:   3'- -GCgGGGCUCUGGUGgUGUGUgUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 121145 0.73 0.544941
Target:  5'- gCGCgCCGAcGCCGCgGCGCuGCAGCGCu -3'
miRNA:   3'- -GCGgGGCUcUGGUGgUGUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 6027 0.72 0.562876
Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3'
miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 98254 0.72 0.564879
Target:  5'- gGCCCUgGAGGCCGggacCCGCGCGCuggugGACGCg -3'
miRNA:   3'- gCGGGG-CUCUGGU----GGUGUGUG-----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 81850 0.72 0.574921
Target:  5'- gGCCCuCGGGGCCGCgCGCGaGCAgcuGCGCg -3'
miRNA:   3'- gCGGG-GCUCUGGUG-GUGUgUGU---UGUG- -5'
21374 3' -56.4 NC_004812.1 + 2261 0.72 0.585004
Target:  5'- gGUCCgCGucGGCguCCGCGCGCAGCACg -3'
miRNA:   3'- gCGGG-GCu-CUGguGGUGUGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.