Results 21 - 40 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21375 | 3' | -57 | NC_004812.1 | + | 29227 | 0.66 | 0.865725 |
Target: 5'- gGGgGCGGGcGGGGGucgcGGAGGAGCGg- -3' miRNA: 3'- -UCgCGCUCcCCUCCu---CCUCUUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 72044 | 0.66 | 0.865725 |
Target: 5'- aGGCGgugGAGGGGGGGGcugcccgcGGuuuccGGAAGCGCGg -3' miRNA: 3'- -UCGCg--CUCCCCUCCU--------CC-----UCUUUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 121873 | 0.66 | 0.865725 |
Target: 5'- cGGCGCaGAGGGGcGGGgccuGGGGcGggGcCGCAg -3' miRNA: 3'- -UCGCG-CUCCCC-UCC----UCCU-CuuU-GUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 7516 | 0.66 | 0.865725 |
Target: 5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3' miRNA: 3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 71124 | 0.66 | 0.865725 |
Target: 5'- aGGCGCGGGcgccucGGGGGuucGGGGgcGCGCGa -3' miRNA: 3'- -UCGCGCUCc-----CCUCCu--CCUCuuUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 38417 | 0.66 | 0.865725 |
Target: 5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3' miRNA: 3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 37551 | 0.66 | 0.865725 |
Target: 5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3' miRNA: 3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 25573 | 0.66 | 0.865725 |
Target: 5'- cGaCGaCGAcGGGGAGGAcGGcGGGGACGCc -3' miRNA: 3'- uC-GC-GCU-CCCCUCCU-CC-UCUUUGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 11439 | 0.66 | 0.864977 |
Target: 5'- cGGCGgGAGggugccgggagccGGGAGGGGGAaaggaaGAAACGgAa -3' miRNA: 3'- -UCGCgCUC-------------CCCUCCUCCU------CUUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 35751 | 0.66 | 0.864977 |
Target: 5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3' miRNA: 3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 4850 | 0.66 | 0.864977 |
Target: 5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3' miRNA: 3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 39852 | 0.66 | 0.858155 |
Target: 5'- cGGUGCGGGGGGccGGGGGcuccgccauGGCGCGu -3' miRNA: 3'- -UCGCGCUCCCCu-CCUCCucu------UUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 56602 | 0.66 | 0.858155 |
Target: 5'- cGCGCGGGGGGGuGAuGAG-GugGCAg -3' miRNA: 3'- uCGCGCUCCCCUcCUcCUCuUugUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 35659 | 0.66 | 0.858155 |
Target: 5'- cGCGCGGGGGucGGGGGcucuGugGCGCc -3' miRNA: 3'- uCGCGCUCCCcuCCUCCu---CuuUGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 122507 | 0.66 | 0.858155 |
Target: 5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3' miRNA: 3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 153408 | 0.66 | 0.858155 |
Target: 5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3' miRNA: 3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 80614 | 0.66 | 0.858155 |
Target: 5'- gGGCucgGUGGGGGGuccgcGGuGGAGAGGgGCGg -3' miRNA: 3'- -UCG---CGCUCCCCu----CCuCCUCUUUgUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 88704 | 0.66 | 0.850384 |
Target: 5'- cGGUaCGAGGGcGAGuGGGAGAGGCuGCGc -3' miRNA: 3'- -UCGcGCUCCC-CUCcUCCUCUUUG-UGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 20662 | 0.66 | 0.850384 |
Target: 5'- cGcCGCGuGGGaGAGcGAGGAGGuggcgGACGCc -3' miRNA: 3'- uC-GCGCuCCC-CUC-CUCCUCU-----UUGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 120874 | 0.66 | 0.850384 |
Target: 5'- uGGCGCuGuagcGGGGcGGGGcGGAGACGCGg -3' miRNA: 3'- -UCGCG-Cu---CCCCuCCUCcUCUUUGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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