miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 5' -68.3 NC_004812.1 + 154786 0.66 0.391238
Target:  5'- gUCCCCUCCCCCgacggggcggCCCCgacGUCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGG----------GGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 15735 0.66 0.391238
Target:  5'- uCCCgCCaCCCaCCCCCgCgCCUUGCgCGCc- -3'
miRNA:   3'- -GGG-GG-GGG-GGGGG-G-GGAACGgGUGac -5'
21375 5' -68.3 NC_004812.1 + 9650 0.66 0.391238
Target:  5'- gCCCaCUCCCaCCCCgCCCggacgGaCCCACg- -3'
miRNA:   3'- -GGG-GGGGG-GGGGgGGGaa---C-GGGUGac -5'
21375 5' -68.3 NC_004812.1 + 21937 0.66 0.391238
Target:  5'- gCUCCgCCCCCCUCCUCgcgagcGCCUcCUGc -3'
miRNA:   3'- -GGGGgGGGGGGGGGGGaa----CGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 123885 0.66 0.391238
Target:  5'- gUCCCCUCCCCCgacggggcggCCCCgacGUCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGG----------GGGGaa-CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 138836 0.66 0.391238
Target:  5'- aCCCCgUUCUCgCCCCCacGCCCGCc- -3'
miRNA:   3'- -GGGGgGGGGGgGGGGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 95468 0.66 0.388159
Target:  5'- aUCCagguaCCCCCCagCCCCCUgggguacgucuacGCCCGCg- -3'
miRNA:   3'- -GGGg----GGGGGGg-GGGGGAa------------CGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 34731 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21375 5' -68.3 NC_004812.1 + 22638 0.66 0.38357
Target:  5'- gCCCCCCgCCaCCCgggggCUCCCgcgUGCCCGg-- -3'
miRNA:   3'- -GGGGGG-GG-GGG-----GGGGGa--ACGGGUgac -5'
21375 5' -68.3 NC_004812.1 + 3949 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 65490 0.66 0.38357
Target:  5'- gCCCCgCCCCCaagcgaCCCCacgGCCgGCa- -3'
miRNA:   3'- gGGGGgGGGGGg-----GGGGaa-CGGgUGac -5'
21375 5' -68.3 NC_004812.1 + 146458 0.66 0.38357
Target:  5'- gCCCCCCCCCCgUCgCCgucugucGCUCcCUGc -3'
miRNA:   3'- -GGGGGGGGGGgGGgGGaa-----CGGGuGAC- -5'
21375 5' -68.3 NC_004812.1 + 34850 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 3830 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21375 5' -68.3 NC_004812.1 + 54235 0.66 0.381289
Target:  5'- gCCCCCCUCCggcguccuauaaagCCCCCCUcGaCCCGu-- -3'
miRNA:   3'- gGGGGGGGGG--------------GGGGGGAaC-GGGUgac -5'
21375 5' -68.3 NC_004812.1 + 10850 0.66 0.379017
Target:  5'- aCCCCCCCgCgcgacgaccgacgagCCCCCCga-CCCGCg- -3'
miRNA:   3'- gGGGGGGGgG---------------GGGGGGaacGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 89324 0.66 0.379017
Target:  5'- nUCCCgCCCCCgccgcguacgauggaCCCaCCCgcGCCCACa- -3'
miRNA:   3'- -GGGGgGGGGG---------------GGG-GGGaaCGGGUGac -5'
21375 5' -68.3 NC_004812.1 + 42127 0.66 0.376002
Target:  5'- gCCCgCCgCCCUUCCCCCggcgGCCaCGCc- -3'
miRNA:   3'- -GGGgGG-GGGGGGGGGGaa--CGG-GUGac -5'
21375 5' -68.3 NC_004812.1 + 60290 0.66 0.376002
Target:  5'- gCCCCgCCgucgcgCCCCCCCUugggggCCUUGCCCu--- -3'
miRNA:   3'- -GGGG-GG------GGGGGGGG------GGAACGGGugac -5'
21375 5' -68.3 NC_004812.1 + 146208 0.66 0.376002
Target:  5'- aCCUCCgugauCCCCCUCaCCCCgccgGCCCAg-- -3'
miRNA:   3'- -GGGGG-----GGGGGGG-GGGGaa--CGGGUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.