miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 29654 0.7 0.579102
Target:  5'- uCCCUUCUCUCCCccGCCCaUCCcCg -3'
miRNA:   3'- cGGGAAGAGAGGGucUGGGgAGGaGa -5'
21376 3' -59 NC_004812.1 + 29663 0.7 0.539784
Target:  5'- uGCCCggccCUCgcggCCCcGGCCCCUCCcCg -3'
miRNA:   3'- -CGGGaa--GAGa---GGGuCUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 31431 0.66 0.784119
Target:  5'- gGCCCgcgCg--CCCGGGCCCUcccgCCUCc -3'
miRNA:   3'- -CGGGaa-GagaGGGUCUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 34096 0.69 0.599003
Target:  5'- cGCCggCUUCUCUCUCucuccGCCCCUCCg-- -3'
miRNA:   3'- -CGG--GAAGAGAGGGuc---UGGGGAGGaga -5'
21376 3' -59 NC_004812.1 + 34730 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5'
21376 3' -59 NC_004812.1 + 34944 0.67 0.718316
Target:  5'- cGCCCgccgCUCcgccuccgCCgCAGGCCgCUCCUCc -3'
miRNA:   3'- -CGGGaa--GAGa-------GG-GUCUGGgGAGGAGa -5'
21376 3' -59 NC_004812.1 + 37991 0.69 0.636025
Target:  5'- uCCCUuuuuuuccucucugUCUCUCCCccucGGACCCCcaccgccCCUCUc -3'
miRNA:   3'- cGGGA--------------AGAGAGGG----UCUGGGGa------GGAGA- -5'
21376 3' -59 NC_004812.1 + 38210 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 39004 0.66 0.801871
Target:  5'- cGCCCcccCUCccccggCCCGGaACCCCgaaaagCCUCg -3'
miRNA:   3'- -CGGGaa-GAGa-----GGGUC-UGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 41414 0.68 0.649042
Target:  5'- cGCCCUcgcggCUUUCCCGGcCCCC-CCg-- -3'
miRNA:   3'- -CGGGAa----GAGAGGGUCuGGGGaGGaga -5'
21376 3' -59 NC_004812.1 + 45825 0.7 0.539784
Target:  5'- aGCCCgacgagCggCUCCCGGAa-CCUCCUCg -3'
miRNA:   3'- -CGGGaa----Ga-GAGGGUCUggGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 49840 0.66 0.793065
Target:  5'- cGCCCcg--CUCCgAcgccGCCCCUCCUCc -3'
miRNA:   3'- -CGGGaagaGAGGgUc---UGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 50042 0.69 0.608992
Target:  5'- cGCCCgg----CCCGGGCgCCUCCUCc -3'
miRNA:   3'- -CGGGaagagaGGGUCUGgGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 50557 0.67 0.747114
Target:  5'- cGCCagUCUCcCUCGGACCCCUgCgUCg -3'
miRNA:   3'- -CGGgaAGAGaGGGUCUGGGGA-GgAGa -5'
21376 3' -59 NC_004812.1 + 51656 0.68 0.674993
Target:  5'- aGCCCcUCUC-CCCGccgcGACCCCgauccaaagggggCCUCg -3'
miRNA:   3'- -CGGGaAGAGaGGGU----CUGGGGa------------GGAGa -5'
21376 3' -59 NC_004812.1 + 54336 0.7 0.579102
Target:  5'- cGCCCUaCccaUCCCuccCCCCUCCUCg -3'
miRNA:   3'- -CGGGAaGag-AGGGucuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 54545 0.66 0.801871
Target:  5'- uGCCCggCgcgCCCGGcgcgGCCCCggCCUCg -3'
miRNA:   3'- -CGGGaaGagaGGGUC----UGGGGa-GGAGa -5'
21376 3' -59 NC_004812.1 + 55683 0.72 0.437398
Target:  5'- gGCCCagCUCUCC--GGCCCgUCCUCg -3'
miRNA:   3'- -CGGGaaGAGAGGguCUGGGgAGGAGa -5'
21376 3' -59 NC_004812.1 + 55742 0.71 0.492
Target:  5'- cGCCCUcccccgcCUCcCCCGcGGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGAa------GAGaGGGU-CUGGGG-AGGAGa -5'
21376 3' -59 NC_004812.1 + 57673 0.67 0.7376
Target:  5'- gGCCCcgggUCUCUUCCGGGCgCCggCCg-- -3'
miRNA:   3'- -CGGGa---AGAGAGGGUCUGgGGa-GGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.