Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 155024 | 0.68 | 0.794086 |
Target: 5'- -gAGgcGGGGAG-CCGUGcGGGGGgGa -3' miRNA: 3'- ugUCauCCCCUCaGGCACuCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 125542 | 0.68 | 0.811783 |
Target: 5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3' miRNA: 3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 154893 | 0.68 | 0.811783 |
Target: 5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3' miRNA: 3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 40512 | 0.68 | 0.820395 |
Target: 5'- cGCGGgggAGGGGAGgggggCgCGggggagggGAGGGGGCGc -3' miRNA: 3'- -UGUCa--UCCCCUCa----G-GCa-------CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29516 | 0.68 | 0.794086 |
Target: 5'- -gAGgcGGGGAG-CCGUGcGGGGGgGa -3' miRNA: 3'- ugUCauCCCCUCaGGCACuCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 33 | 0.68 | 0.811783 |
Target: 5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3' miRNA: 3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29385 | 0.68 | 0.811783 |
Target: 5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3' miRNA: 3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 156443 | 0.68 | 0.811783 |
Target: 5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3' miRNA: 3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29554 | 0.67 | 0.828837 |
Target: 5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3' miRNA: 3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 50198 | 0.67 | 0.868254 |
Target: 5'- cGCAG-AGGaacgccGGGG-CCGUGAGGccGAGCGg -3' miRNA: 3'- -UGUCaUCC------CCUCaGGCACUCU--CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 155062 | 0.67 | 0.828837 |
Target: 5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3' miRNA: 3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 80690 | 0.67 | 0.860766 |
Target: 5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3' miRNA: 3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 77937 | 0.67 | 0.860766 |
Target: 5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3' miRNA: 3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 156196 | 0.67 | 0.828837 |
Target: 5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3' miRNA: 3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 27793 | 0.67 | 0.845183 |
Target: 5'- cCGGgggagAGGGcGGGgCCGggGGGGGAGCGg -3' miRNA: 3'- uGUCa----UCCC-CUCaGGCa-CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 30688 | 0.67 | 0.828837 |
Target: 5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3' miRNA: 3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 100862 | 0.67 | 0.828837 |
Target: 5'- gACGGggccgcGGGGGAGg-CGgGGGAGGGCGc -3' miRNA: 3'- -UGUCa-----UCCCCUCagGCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148483 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 72124 | 0.66 | 0.908617 |
Target: 5'- cCGGUGGaGGcGGGUCgG-GAGGGuGCGg -3' miRNA: 3'- uGUCAUC-CC-CUCAGgCaCUCUCuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 153448 | 0.66 | 0.908617 |
Target: 5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3' miRNA: 3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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