miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 115525 0.69 0.757029
Target:  5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3'
miRNA:   3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 45449 0.69 0.757029
Target:  5'- gGCAG-AGGGugguGAGgugCCG-GAGGGAGCGc -3'
miRNA:   3'- -UGUCaUCCC----CUCa--GGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 38843 0.69 0.757029
Target:  5'- cGCGGccGGGGGGcgcGUCCG-GGGGGGGCc -3'
miRNA:   3'- -UGUCa-UCCCCU---CAGGCaCUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 16801 0.69 0.72806
Target:  5'- -gGGgcgGGGGGAGUCUG-GAGGacGGGCGc -3'
miRNA:   3'- ugUCa--UCCCCUCAGGCaCUCU--CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 4778 0.69 0.72806
Target:  5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3'
miRNA:   3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 35679 0.69 0.72806
Target:  5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3'
miRNA:   3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 45102 0.7 0.708323
Target:  5'- gGCGGgcGGGGGG--CGUGAGucGGGGCGa -3'
miRNA:   3'- -UGUCauCCCCUCagGCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 145386 0.7 0.708323
Target:  5'- aACGGcGGGGGAgaugcGUCCGUcgGAG-GAGCGc -3'
miRNA:   3'- -UGUCaUCCCCU-----CAGGCA--CUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16126 0.7 0.698355
Target:  5'- -uGGUGGcGGGGGcccCCGUGGuGGGGGCGg -3'
miRNA:   3'- ugUCAUC-CCCUCa--GGCACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5105 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 118599 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5'
21376 5' -56.5 NC_004812.1 + 36006 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 149500 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5'
21376 5' -56.5 NC_004812.1 + 69954 0.7 0.668154
Target:  5'- gGCcGaGGGGGGGUCUGUGGccGGGGGCu -3'
miRNA:   3'- -UGuCaUCCCCUCAGGCACU--CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 10505 0.71 0.617351
Target:  5'- -gGGUAGGGGAGagaagCCGgagGcGGGGGCGg -3'
miRNA:   3'- ugUCAUCCCCUCa----GGCa--CuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 147820 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 116919 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 47840 0.72 0.566812
Target:  5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3'
miRNA:   3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 43041 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 43007 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.