Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 16714 | 0.73 | 0.498098 |
|
Target: 5'- gGguGUGGGGGGGUUCcguaggggaugGUGAGGGGGCc -3' miRNA: 3'- -UguCAUCCCCUCAGG-----------CACUCUCUCGc -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 6652 | 0.74 | 0.479132 |
|
Target: 5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3' miRNA: 3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 37553 | 0.74 | 0.479132 |
|
Target: 5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3' miRNA: 3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 36857 | 0.74 | 0.469783 |
|
Target: 5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3' miRNA: 3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 5956 | 0.74 | 0.469783 |
|
Target: 5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3' miRNA: 3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 80618 | 0.76 | 0.390231 |
|
Target: 5'- uCGGUGGGGG-GUCCGcggugGAGAgGGGCGg -3' miRNA: 3'- uGUCAUCCCCuCAGGCa----CUCU-CUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 16211 | 0.8 | 0.214177 |
|
Target: 5'- gACGGUGGGGGugguGUCCGUGGcGAGcGCGg -3' miRNA: 3'- -UGUCAUCCCCu---CAGGCACU-CUCuCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 118304 | 1.09 | 0.002654 |
|
Target: 5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3' miRNA: 3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5' |
|||||||
| 21376 | 5' | -56.5 | NC_004812.1 | + | 149205 | 1.09 | 0.002654 |
|
Target: 5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3' miRNA: 3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home