Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 100862 | 0.67 | 0.828837 |
Target: 5'- gACGGggccgcGGGGGAGg-CGgGGGAGGGCGc -3' miRNA: 3'- -UGUCa-----UCCCCUCagGCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 101406 | 0.66 | 0.887411 |
Target: 5'- -uGGUAGGGGGucGUCCGcagcuggcggucggUGAGcucgcGGAGCGc -3' miRNA: 3'- ugUCAUCCCCU--CAGGC--------------ACUC-----UCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 104172 | 0.68 | 0.785017 |
Target: 5'- cGCGGgcGGGGGGaugggcggcgaUgCGggGAGGGAGCGa -3' miRNA: 3'- -UGUCauCCCCUC-----------AgGCa-CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 106751 | 0.66 | 0.882597 |
Target: 5'- cCGGgcgcGGGGGGGUCgGagGAG-GGGCGg -3' miRNA: 3'- uGUCa---UCCCCUCAGgCa-CUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 115525 | 0.69 | 0.757029 |
Target: 5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3' miRNA: 3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 116919 | 0.72 | 0.607192 |
Target: 5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3' miRNA: 3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 118304 | 1.09 | 0.002654 |
Target: 5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3' miRNA: 3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 118599 | 0.7 | 0.688331 |
Target: 5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3' miRNA: 3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 122547 | 0.66 | 0.908617 |
Target: 5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3' miRNA: 3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 125542 | 0.68 | 0.811783 |
Target: 5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3' miRNA: 3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 137987 | 0.66 | 0.896062 |
Target: 5'- uCGGgggGGGGGGGgggggGGGGGAGCGg -3' miRNA: 3'- uGUCa--UCCCCUCaggcaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 145386 | 0.7 | 0.708323 |
Target: 5'- aACGGcGGGGGAgaugcGUCCGUcgGAG-GAGCGc -3' miRNA: 3'- -UGUCaUCCCCU-----CAGGCA--CUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 147820 | 0.72 | 0.607192 |
Target: 5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3' miRNA: 3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148483 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148535 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148587 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148639 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148716 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 148768 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 149205 | 1.09 | 0.002654 |
Target: 5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3' miRNA: 3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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