miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 40571 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 40709 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23130 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23026 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 70272 0.66 0.896062
Target:  5'- cGCGGUGGGGGGcaacucguuGUCCGgggcguugucGAGAucGCGg -3'
miRNA:   3'- -UGUCAUCCCCU---------CAGGCa---------CUCUcuCGC- -5'
21376 5' -56.5 NC_004812.1 + 43041 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 47840 0.72 0.566812
Target:  5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3'
miRNA:   3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 5956 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148535 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 4778 0.69 0.72806
Target:  5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3'
miRNA:   3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 35553 0.66 0.882597
Target:  5'- cGCGGgcGGGGc--CCGgauagaggGAGGGGGCGg -3'
miRNA:   3'- -UGUCauCCCCucaGGCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 77937 0.67 0.860766
Target:  5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3'
miRNA:   3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 80690 0.67 0.860766
Target:  5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3'
miRNA:   3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5'
21376 5' -56.5 NC_004812.1 + 27793 0.67 0.845183
Target:  5'- cCGGgggagAGGGcGGGgCCGggGGGGGAGCGg -3'
miRNA:   3'- uGUCa----UCCC-CUCaGGCa-CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 155062 0.67 0.828837
Target:  5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3'
miRNA:   3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 154893 0.68 0.811783
Target:  5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3'
miRNA:   3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 156196 0.67 0.828837
Target:  5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3'
miRNA:   3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 5337 0.69 0.775811
Target:  5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3'
miRNA:   3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 7942 0.69 0.757029
Target:  5'- cGCGGccgGGGGGcgcGUCCG-GGGGGGGCc -3'
miRNA:   3'- -UGUCa--UCCCCu--CAGGCaCUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 115525 0.69 0.757029
Target:  5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3'
miRNA:   3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.