Results 61 - 80 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 47840 | 0.72 | 0.566812 |
Target: 5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3' miRNA: 3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 43041 | 0.73 | 0.536978 |
Target: 5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3' miRNA: 3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 43007 | 0.73 | 0.536978 |
Target: 5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3' miRNA: 3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 156196 | 0.67 | 0.828837 |
Target: 5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3' miRNA: 3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 155062 | 0.67 | 0.828837 |
Target: 5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3' miRNA: 3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 122547 | 0.66 | 0.908617 |
Target: 5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3' miRNA: 3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 7491 | 0.66 | 0.908617 |
Target: 5'- -gGGaUGGGGGGGggaCgGUGGGccGGAGCGa -3' miRNA: 3'- ugUC-AUCCCCUCa--GgCACUC--UCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 70880 | 0.66 | 0.902455 |
Target: 5'- uGCGcgGGGGGGG-CgGgGAGGGGGCGg -3' miRNA: 3'- -UGUcaUCCCCUCaGgCaCUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 5709 | 0.66 | 0.896062 |
Target: 5'- cACGGgggGGcGGGGGUCUGccgcggGAGgAGGGCGc -3' miRNA: 3'- -UGUCa--UC-CCCUCAGGCa-----CUC-UCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 137987 | 0.66 | 0.896062 |
Target: 5'- uCGGgggGGGGGGGgggggGGGGGAGCGg -3' miRNA: 3'- uGUCa--UCCCCUCaggcaCUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 16559 | 0.66 | 0.889441 |
Target: 5'- uCGGggAGGaGGAG-CUGUGGGAG-GCGa -3' miRNA: 3'- uGUCa-UCC-CCUCaGGCACUCUCuCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 8184 | 0.66 | 0.889441 |
Target: 5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3' miRNA: 3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 101406 | 0.66 | 0.887411 |
Target: 5'- -uGGUAGGGGGucGUCCGcagcuggcggucggUGAGcucgcGGAGCGc -3' miRNA: 3'- ugUCAUCCCCU--CAGGC--------------ACUC-----UCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 148768 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 148716 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 148483 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 35553 | 0.66 | 0.882597 |
Target: 5'- cGCGGgcGGGGc--CCGgauagaggGAGGGGGCGg -3' miRNA: 3'- -UGUCauCCCCucaGGCa-------CUCUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 77937 | 0.67 | 0.860766 |
Target: 5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3' miRNA: 3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 80690 | 0.67 | 0.860766 |
Target: 5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3' miRNA: 3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5' |
|||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 27793 | 0.67 | 0.845183 |
Target: 5'- cCGGgggagAGGGcGGGgCCGggGGGGGAGCGg -3' miRNA: 3'- uGUCa----UCCC-CUCaGGCa-CUCUCUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home