miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 36917 0.73 0.462354
Target:  5'- gGGACGguGCCGCcagCUCCCGCAGCCc -3'
miRNA:   3'- -CUUGUacCGGCGca-GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 36204 0.74 0.453151
Target:  5'- uGAGCGcGGCCGCGUCgccCUCGCggUCGc -3'
miRNA:   3'- -CUUGUaCCGGCGCAGa--GGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 14575 0.74 0.435049
Target:  5'- gGGGCA-GGCCcgcggGCGUCUCCagCGCGGCCAc -3'
miRNA:   3'- -CUUGUaCCGG-----CGCAGAGG--GCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136930 0.75 0.38337
Target:  5'- cGACcgGGCCGCccucGUC-CCCGCGGCCc -3'
miRNA:   3'- cUUGuaCCGGCG----CAGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 127720 0.76 0.351259
Target:  5'- cAGCGUGucGCCGCGg--CCCGCGGCCAg -3'
miRNA:   3'- cUUGUAC--CGGCGCagaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 97325 0.71 0.599462
Target:  5'- cGGGCggGuGCCGCG-CgCCCGCGACCc -3'
miRNA:   3'- -CUUGuaC-CGGCGCaGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 42187 0.71 0.609636
Target:  5'- cGAGCG-GGCCcugggcgagGCGUCUCCCGUugacuACCu -3'
miRNA:   3'- -CUUGUaCCGG---------CGCAGAGGGCGu----UGGu -5'
21378 3' -57 NC_004812.1 + 44005 0.69 0.710994
Target:  5'- -cACAUGGCCGaggccagcaGgaggCUCCgGCGGCCGc -3'
miRNA:   3'- cuUGUACCGGCg--------Ca---GAGGgCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 4440 0.69 0.705013
Target:  5'- --cCcgGGCCGCGUgUCCCcgcccgaguaccccgGCGACCc -3'
miRNA:   3'- cuuGuaCCGGCGCAgAGGG---------------CGUUGGu -5'
21378 3' -57 NC_004812.1 + 125653 0.69 0.701014
Target:  5'- -cGCGUGgcGCCGCGcCgccgcgCCCGCGGCCc -3'
miRNA:   3'- cuUGUAC--CGGCGCaGa-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 135569 0.69 0.690976
Target:  5'- aGGCggGGCaCG-GUCUCgCGCAGCCAc -3'
miRNA:   3'- cUUGuaCCG-GCgCAGAGgGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 101960 0.69 0.690976
Target:  5'- cGGGCGUcaggGGCCGCGgacgCCCGCcGCCc -3'
miRNA:   3'- -CUUGUA----CCGGCGCaga-GGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 63230 0.7 0.680889
Target:  5'- aGGACGaGGCgGCcUUUCCCGUGGCCGc -3'
miRNA:   3'- -CUUGUaCCGgCGcAGAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 109496 0.7 0.650424
Target:  5'- cGGCGgcuGCUGCGUCUCgCCGCGACgGa -3'
miRNA:   3'- cUUGUac-CGGCGCAGAG-GGCGUUGgU- -5'
21378 3' -57 NC_004812.1 + 137097 0.7 0.650424
Target:  5'- cGGGCucggaaGGCUGCGUCUUCgagUGCAGCCAc -3'
miRNA:   3'- -CUUGua----CCGGCGCAGAGG---GCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 85567 0.7 0.640228
Target:  5'- aGGACAUGGCCGC----CCCGCcACCc -3'
miRNA:   3'- -CUUGUACCGGCGcagaGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 73200 0.7 0.630027
Target:  5'- cGGGCggGGCCGggaCGUC-CUCGCGGCCGc -3'
miRNA:   3'- -CUUGuaCCGGC---GCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 24528 0.7 0.630027
Target:  5'- -uGCGgucggGGCUGCGUCaccaCCCGCAGCUc -3'
miRNA:   3'- cuUGUa----CCGGCGCAGa---GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 8207 0.71 0.619827
Target:  5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3'
miRNA:   3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 113170 0.71 0.609636
Target:  5'- cGGCGgagGGCCGCGUCgCCCGagaaGAUCGg -3'
miRNA:   3'- cUUGUa--CCGGCGCAGaGGGCg---UUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.