miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 1669 0.66 0.847662
Target:  5'- ----uUGGCCGCGg--CgCCGCGGCCc -3'
miRNA:   3'- cuuguACCGGCGCagaG-GGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 42863 0.66 0.847662
Target:  5'- -uACcUGGCCGCGcucCUCgCCGCGcACCu -3'
miRNA:   3'- cuUGuACCGGCGCa--GAG-GGCGU-UGGu -5'
21378 3' -57 NC_004812.1 + 154204 0.66 0.847662
Target:  5'- gGGGC-UGGCCGCGcCg-CUGCGGCCc -3'
miRNA:   3'- -CUUGuACCGGCGCaGagGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 101133 0.66 0.847662
Target:  5'- cGAACGgcuucgcGGCgCGCGUgcgCUUCUGCGACCu -3'
miRNA:   3'- -CUUGUa------CCG-GCGCA---GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 28696 0.66 0.847662
Target:  5'- gGGGC-UGGCCGCGcCg-CUGCGGCCc -3'
miRNA:   3'- -CUUGuACCGGCGCaGagGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 113047 0.66 0.847662
Target:  5'- cGGACGgccgcGGCCgGCGUCggCCGCGGCg- -3'
miRNA:   3'- -CUUGUa----CCGG-CGCAGagGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 46704 0.67 0.84043
Target:  5'- cGACGUGcaGCCGCucgaacggaaucggCUCCCGCAgaGCCAc -3'
miRNA:   3'- cUUGUAC--CGGCGca------------GAGGGCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 131118 0.67 0.839617
Target:  5'- cGGGCAUGGUgggCGCGUCUCUgGaCAuCCu -3'
miRNA:   3'- -CUUGUACCG---GCGCAGAGGgC-GUuGGu -5'
21378 3' -57 NC_004812.1 + 19863 0.67 0.839617
Target:  5'- aGAACcgGGUCguugaGCGUCUCCaGCGGCgCGg -3'
miRNA:   3'- -CUUGuaCCGG-----CGCAGAGGgCGUUG-GU- -5'
21378 3' -57 NC_004812.1 + 128315 0.67 0.839617
Target:  5'- aGACGUGGCgGCGcgCgacggcgggCCCGuCGGCCGg -3'
miRNA:   3'- cUUGUACCGgCGCa-Ga--------GGGC-GUUGGU- -5'
21378 3' -57 NC_004812.1 + 31870 0.67 0.839617
Target:  5'- cAGCcgGGgCG-GUCUCCCcCGGCCAg -3'
miRNA:   3'- cUUGuaCCgGCgCAGAGGGcGUUGGU- -5'
21378 3' -57 NC_004812.1 + 67666 0.67 0.839617
Target:  5'- -----cGGCCGCGccCUCCuCGCcACCGg -3'
miRNA:   3'- cuuguaCCGGCGCa-GAGG-GCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 2807 0.67 0.839617
Target:  5'- aGACGUGGCgGCGcgCgacggcgggCCCGuCGGCCGg -3'
miRNA:   3'- cUUGUACCGgCGCa-Ga--------GGGC-GUUGGU- -5'
21378 3' -57 NC_004812.1 + 90933 0.67 0.838802
Target:  5'- cGAGCG-GGCCuuggcggGCGcUCUCCCGCGGggcuCCGg -3'
miRNA:   3'- -CUUGUaCCGG-------CGC-AGAGGGCGUU----GGU- -5'
21378 3' -57 NC_004812.1 + 103915 0.67 0.837166
Target:  5'- aGGACAgcgGGCUGCuggacuacaccgagGUCcagCgCCGCAACCAg -3'
miRNA:   3'- -CUUGUa--CCGGCG--------------CAGa--G-GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 124920 0.67 0.831384
Target:  5'- cGGCGggGGCgGCGgcccaUCUCCCGCGggGCCc -3'
miRNA:   3'- cUUGUa-CCGgCGC-----AGAGGGCGU--UGGu -5'
21378 3' -57 NC_004812.1 + 5608 0.67 0.831384
Target:  5'- -uGCGaGGCCGCGUCguaguagaaCCGgGGCCGc -3'
miRNA:   3'- cuUGUaCCGGCGCAGag-------GGCgUUGGU- -5'
21378 3' -57 NC_004812.1 + 120174 0.67 0.831384
Target:  5'- cAACGcGGCCGCgGUCUUCCuacGCAacGCCGu -3'
miRNA:   3'- cUUGUaCCGGCG-CAGAGGG---CGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 130867 0.67 0.831384
Target:  5'- gGGGCcccgggGGCCGUGUUUCUCGCc-CCAg -3'
miRNA:   3'- -CUUGua----CCGGCGCAGAGGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 97711 0.67 0.831384
Target:  5'- gGGACGUGGCgCGCGUCaaCCuCGGCUu -3'
miRNA:   3'- -CUUGUACCG-GCGCAGagGGcGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.